View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_21 (Length: 437)
Name: NF6867A_low_21
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 1329250 - 1329666
Alignment:
| Q |
20 |
atagtggctctttatccaattgtgaaggagagttttcaatcatattacgacatatcagaaatattgagcatcttaatcgaccgttttcctgacatggatg |
119 |
Q |
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| T |
1329250 |
atagtggctctttatccaattgtgaaggagagttttcaatcatattacgacatatcagaaatattgagcatcttaatcgaccgtttttctgacatggatg |
1329349 |
T |
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| Q |
120 |
tcgcagactgtatcaaggtgtatgacattttctgtcgtattggaaaacagtttgatgagctagacctcttctatggatggtccaagaatattggaatttg |
219 |
Q |
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| T |
1329350 |
tcgcagactgtatcaaggtgtatgacattttctgtcgtattggaaaacagtttgatgagctagacctcttctatggatggtccaagaatattggaatttg |
1329449 |
T |
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| Q |
220 |
tcgctcttctgagtaccctgagatagataaggtcacaccaaagaagttagaggttatggaagagtttatcaaagataagaacatgctagcacaaagcaat |
319 |
Q |
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| T |
1329450 |
tcgctcttctgagtaccctgagatagataaggtcacaccaaagaagttagaggttatggaagagtttatcaaagataagaacatgctagcacaaagcaat |
1329549 |
T |
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| Q |
320 |
aaagctgatgttcaagaagagaacaattcggatgaagaagccaaggaacaccaaactcgaacctgaaccggaagaggatatgaatgaagtcaaggccctt |
419 |
Q |
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| T |
1329550 |
aaagctgatgttcaagaagagaacaattcggatgaagaagccaaggaac-ccgaacccgaacctgaaccggaagaggatatgaatgcagtcaaggccctt |
1329648 |
T |
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| Q |
420 |
ccaccaccagaggaacca |
437 |
Q |
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| T |
1329649 |
ccaccaccagaggaacca |
1329666 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 1924853 - 1924897
Alignment:
| Q |
20 |
atagtggctctttatccaattgtgaaggagagttttcaatcatat |
64 |
Q |
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| T |
1924853 |
atagtggcactctacccaattgtgaaggagagttttcaaacatat |
1924897 |
T |
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