View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_210 (Length: 268)

Name: NF6867A_low_210
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_210
NF6867A_low_210
[»] chr1 (9 HSPs)
chr1 (27-259)||(30797501-30797719)
chr1 (169-244)||(30795428-30795504)
chr1 (154-253)||(30801844-30801944)
chr1 (154-231)||(30750547-30750625)
chr1 (154-231)||(30752358-30752436)
chr1 (154-233)||(30809270-30809350)
chr1 (192-236)||(30742049-30742093)
chr1 (154-231)||(30762692-30762770)
chr1 (121-155)||(30802047-30802081)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 30797719 - 30797501
Alignment:
Q  27 atattggtatcaaaggatacattcttatcattataattaataaatgtacacattcatcactattgtgtgaagtagagtcaagctagcgacactaaaaagc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  30797719 atattggtatcaaaggatacattcttatcattataattaataaatgtacacattcatcactattgtgtgaagtagagtcaagctagcgacactaaac--- 30797623  T
Q  127 aatggagaaacttattacaaattgttggtgaagcacataagggtgatagaaccaaaataattcaaaaa-ttattaaagctgctcaggagtttggattctt 225  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  30797622 ------------tattacaaattgttggtgaagcacataagggtgatagaaccaaaataattcaaaaaattattaaagctgctcagaagtttggattctt 30797535  T
Q  226 taaggttcatatagttcatgccatttatattctt 259  Q
    |||||||||||||||||||||||||||| |||||    
T  30797534 taaggttcatatagttcatgccatttattttctt 30797501  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 30795504 - 30795428
Alignment:
Q  169 gtgatagaaccaaaataattcaaaaa-ttattaaagctgctcaggagtttggattctttaaggttcatatagttcat 244  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| || || |||||||||||    
T  30795504 gtgatagaaccaatataattcaaaaagttattaaagctgctcaggagttttgattctttcagatttatatagttcat 30795428  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 30801944 - 30801844
Alignment:
Q  154 gtgaagcacataagggtgatagaaccaaaataattca-aaaattattaaagctgctcaggagtttggattctttaaggttcatatagttcatgccattta 252  Q
    ||||||||  |||||||||||||| ||| |||||  | |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |||||||||    
T  30801944 gtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaaagctgctgaggagtttggattctttcaggttcatctagttcgtgccattta 30801845  T
Q  253 t 253  Q
    |    
T  30801844 t 30801844  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 30750625 - 30750547
Alignment:
Q  154 gtgaagcacataagggtgatagaaccaaaataattcaa-aaattattaaagctgctcaggagtttggattctttaaggt 231  Q
    |||||||||| || |||||||||||||||| ||||||| ||||||| || |||||| ||||||||||||||||| ||||    
T  30750625 gtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt 30750547  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 30752436 - 30752358
Alignment:
Q  154 gtgaagcacataagggtgatagaaccaaaataattcaa-aaattattaaagctgctcaggagtttggattctttaaggt 231  Q
    |||||||||| || |||||||||||||||| ||||||| ||||||| || |||||| ||||||||||||||||| ||||    
T  30752436 gtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt 30752358  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 30809350 - 30809270
Alignment:
Q  154 gtgaagcacataagggtgatagaaccaaaataattca-aaaattattaaagctgctcaggagtttggattctttaaggttc 233  Q
    |||||||||| |||||||||||||| || |||||||| ||||| || |||||| || ||||||||||||||||| ||||||    
T  30809350 gtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc 30809270  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 30742093 - 30742049
Alignment:
Q  192 aaattattaaagctgctcaggagtttggattctttaaggttcata 236  Q
    ||||||| || |||||||||||||||||||||||| |||||||||    
T  30742093 aaattatcaaggctgctcaggagtttggattctttcaggttcata 30742049  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 30762770 - 30762692
Alignment:
Q  154 gtgaagcacataagggtgatagaaccaaaataattcaa-aaattattaaagctgctcaggagtttggattctttaaggt 231  Q
    |||||||||| || || ||||||||||||| ||| ||| ||||||| || ||| || ||||||||||||||||| ||||    
T  30762770 gtgaagcacaaaatggggatagaaccaaaacaatacaacaaattatcaaggcttctgaggagtttggattctttcaggt 30762692  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 30802081 - 30802047
Alignment:
Q  121 aaaagcaatggagaaacttattacaaattgttggt 155  Q
    |||||||||||||||||||||||||||| ||||||    
T  30802081 aaaagcaatggagaaacttattacaaatcgttggt 30802047  T

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