View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_215 (Length: 267)

Name: NF6867A_low_215
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_215
NF6867A_low_215
[»] chr7 (29 HSPs)
chr7 (8-140)||(5237848-5237986)
chr7 (50-139)||(37714459-37714548)
chr7 (77-139)||(28015335-28015398)
chr7 (64-131)||(24470361-24470429)
chr7 (64-131)||(24475309-24475377)
chr7 (64-139)||(49166893-49166969)
chr7 (64-123)||(21954924-21954982)
chr7 (64-130)||(47749700-47749767)
chr7 (86-139)||(21603441-21603494)
chr7 (86-125)||(24988458-24988497)
chr7 (77-139)||(29804748-29804811)
chr7 (90-139)||(10574363-10574413)
chr7 (86-139)||(21990639-21990693)
chr7 (64-110)||(37399582-37399628)
chr7 (64-110)||(40775233-40775279)
chr7 (64-124)||(34595737-34595798)
chr7 (86-119)||(42644654-42644687)
chr7 (86-119)||(45457666-45457699)
chr7 (86-119)||(46026139-46026172)
chr7 (86-119)||(48304505-48304538)
chr7 (64-104)||(8611730-8611770)
chr7 (64-139)||(21329368-21329443)
chr7 (88-139)||(22747596-22747648)
chr7 (84-123)||(23732481-23732521)
chr7 (84-131)||(35141833-35141881)
chr7 (64-131)||(38649438-38649506)
chr7 (90-122)||(39707272-39707304)
chr7 (86-125)||(41287935-41287975)
chr7 (64-139)||(41748573-41748649)
[»] chr5 (18 HSPs)
chr5 (64-139)||(33486642-33486718)
chr5 (64-139)||(31645795-31645871)
chr5 (64-139)||(6887250-6887326)
chr5 (91-139)||(2415393-2415442)
chr5 (72-125)||(4070529-4070582)
chr5 (64-131)||(34893996-34894064)
chr5 (85-139)||(29310421-29310476)
chr5 (86-139)||(7771895-7771949)
chr5 (61-139)||(31255344-31255422)
chr5 (63-108)||(8957176-8957221)
chr5 (86-119)||(17331306-17331339)
chr5 (55-100)||(18323530-18323575)
chr5 (86-119)||(23882226-23882259)
chr5 (86-119)||(33164578-33164611)
chr5 (63-123)||(37424958-37425019)
chr5 (64-131)||(8812232-8812300)
chr5 (86-125)||(17096345-17096385)
chr5 (84-139)||(41554472-41554528)
[»] chr2 (36 HSPs)
chr2 (52-139)||(6510441-6510526)
chr2 (64-139)||(3390398-3390474)
chr2 (64-139)||(10589004-10589080)
chr2 (64-131)||(25516460-25516528)
chr2 (64-139)||(25771411-25771487)
chr2 (64-139)||(40125355-40125431)
chr2 (86-139)||(36867986-36868040)
chr2 (64-139)||(3602951-3603027)
chr2 (64-131)||(37883619-37883687)
chr2 (52-112)||(38450184-38450244)
chr2 (64-131)||(41176828-41176896)
chr2 (64-110)||(3464925-3464971)
chr2 (82-139)||(15674046-15674104)
chr2 (64-131)||(6089859-6089927)
chr2 (64-139)||(27024211-27024287)
chr2 (64-131)||(27191415-27191483)
chr2 (64-131)||(27841229-27841297)
chr2 (64-131)||(44167789-44167857)
chr2 (64-108)||(44951468-44951512)
chr2 (59-118)||(7582201-7582260)
chr2 (77-131)||(19581083-19581138)
chr2 (64-126)||(43566843-43566905)
chr2 (86-139)||(11937948-11938002)
chr2 (86-139)||(20561221-20561275)
chr2 (86-139)||(43474217-43474271)
chr2 (86-119)||(5754266-5754299)
chr2 (86-119)||(7073058-7073091)
chr2 (87-131)||(7640436-7640481)
chr2 (86-119)||(12704665-12704698)
chr2 (86-119)||(12891199-12891232)
chr2 (74-139)||(20598724-20598789)
chr2 (86-119)||(32015198-32015231)
chr2 (86-119)||(38535415-38535448)
chr2 (77-125)||(13268553-13268601)
chr2 (84-131)||(29812695-29812743)
chr2 (77-124)||(42105839-42105887)
[»] chr1 (26 HSPs)
chr1 (64-139)||(13691830-13691907)
chr1 (77-131)||(52839402-52839457)
chr1 (64-124)||(44514077-44514138)
chr1 (63-139)||(18889031-18889107)
chr1 (64-139)||(22344984-22345060)
chr1 (91-139)||(33125895-33125943)
chr1 (64-126)||(14717327-14717390)
chr1 (71-139)||(22032161-22032231)
chr1 (64-110)||(27469834-27469880)
chr1 (86-139)||(33939091-33939145)
chr1 (94-139)||(40862910-40862955)
chr1 (61-120)||(34335206-34335265)
chr1 (62-124)||(24114782-24114844)
chr1 (86-139)||(33487119-33487173)
chr1 (86-119)||(424401-424434)
chr1 (86-119)||(7995670-7995703)
chr1 (86-119)||(12871599-12871632)
chr1 (86-119)||(28678240-28678273)
chr1 (46-123)||(31427250-31427327)
chr1 (86-139)||(42276335-42276388)
chr1 (90-122)||(8937612-8937644)
chr1 (88-139)||(32784088-32784140)
chr1 (84-128)||(32878684-32878728)
chr1 (79-126)||(46589157-46589205)
chr1 (71-139)||(50108006-50108074)
chr1 (84-131)||(52839507-52839555)
[»] chr4 (30 HSPs)
chr4 (64-139)||(9661819-9661895)
chr4 (54-106)||(46829365-46829417)
chr4 (64-139)||(3673589-3673665)
chr4 (64-139)||(4634249-4634325)
chr4 (68-139)||(7242841-7242913)
chr4 (77-139)||(46728992-46729054)
chr4 (46-124)||(7454641-7454719)
chr4 (61-123)||(38431602-38431664)
chr4 (63-131)||(43156741-43156811)
chr4 (86-139)||(43244470-43244524)
chr4 (86-119)||(22757072-22757105)
chr4 (64-131)||(1657650-1657718)
chr4 (64-139)||(11817038-11817114)
chr4 (64-131)||(16991838-16991906)
chr4 (64-123)||(54420800-54420860)
chr4 (61-125)||(56061953-56062016)
chr4 (58-113)||(56171823-56171878)
chr4 (66-139)||(14542584-14542658)
chr4 (86-139)||(25658145-25658199)
chr4 (64-106)||(40859627-40859669)
chr4 (87-139)||(394363-394416)
chr4 (90-127)||(22049506-22049543)
chr4 (88-128)||(27394810-27394851)
chr4 (71-131)||(41486548-41486609)
chr4 (64-131)||(1646021-1646089)
chr4 (88-139)||(8712510-8712562)
chr4 (64-131)||(28588527-28588595)
chr4 (88-139)||(31521962-31522014)
chr4 (49-113)||(39797809-39797871)
chr4 (64-139)||(47465884-47465960)
[»] chr3 (34 HSPs)
chr3 (64-139)||(1165468-1165544)
chr3 (84-124)||(4019588-4019628)
chr3 (64-131)||(20201138-20201206)
chr3 (64-131)||(20203320-20203388)
chr3 (68-131)||(27831082-27831145)
chr3 (40-124)||(37451669-37451754)
chr3 (64-131)||(42106077-42106145)
chr3 (64-131)||(50519756-50519824)
chr3 (64-139)||(40796999-40797074)
chr3 (64-110)||(22286851-22286897)
chr3 (67-139)||(1806532-1806605)
chr3 (64-139)||(40462067-40462143)
chr3 (64-139)||(43029649-43029725)
chr3 (64-107)||(47914688-47914731)
chr3 (86-139)||(14585440-14585494)
chr3 (68-131)||(20251621-20251686)
chr3 (86-139)||(30156378-30156432)
chr3 (64-110)||(43839618-43839664)
chr3 (86-119)||(11819061-11819094)
chr3 (86-119)||(13702090-13702123)
chr3 (86-119)||(19861395-19861428)
chr3 (86-119)||(31462864-31462897)
chr3 (86-119)||(36691917-36691950)
chr3 (86-119)||(48400877-48400910)
chr3 (86-119)||(53155548-53155581)
chr3 (85-125)||(106148-106188)
chr3 (49-125)||(533919-533995)
chr3 (84-131)||(1220295-1220343)
chr3 (90-122)||(2362562-2362594)
chr3 (59-139)||(5327574-5327653)
chr3 (64-108)||(21086044-21086088)
chr3 (64-131)||(35501839-35501906)
chr3 (64-139)||(37051590-37051666)
chr3 (64-131)||(41882488-41882556)
[»] chr8 (25 HSPs)
chr8 (77-139)||(37658945-37659008)
chr8 (84-139)||(14530980-14531036)
chr8 (84-139)||(15665525-15665581)
chr8 (64-138)||(32061760-32061835)
chr8 (72-139)||(32256793-32256862)
chr8 (64-131)||(9269987-9270055)
chr8 (68-131)||(10042731-10042795)
chr8 (64-139)||(16937411-16937487)
chr8 (64-131)||(31874050-31874118)
chr8 (64-139)||(32920618-32920694)
chr8 (91-126)||(25939758-25939793)
chr8 (77-131)||(26937504-26937559)
chr8 (64-110)||(14327445-14327491)
chr8 (68-110)||(27534501-27534543)
chr8 (66-139)||(44295284-44295358)
chr8 (86-119)||(1810337-1810370)
chr8 (86-119)||(31407866-31407899)
chr8 (86-119)||(37612631-37612664)
chr8 (92-124)||(2968513-2968545)
chr8 (64-131)||(9992631-9992699)
chr8 (86-125)||(10147924-10147964)
chr8 (107-139)||(17019114-17019146)
chr8 (107-139)||(17549551-17549583)
chr8 (64-139)||(18190916-18190991)
chr8 (51-139)||(42260879-42260966)
[»] scaffold0886 (1 HSPs)
scaffold0886 (52-122)||(3846-3915)
[»] scaffold0580 (2 HSPs)
scaffold0580 (60-126)||(881-947)
scaffold0580 (60-126)||(8620-8686)
[»] chr6 (14 HSPs)
chr6 (68-125)||(7049217-7049275)
chr6 (64-139)||(12576550-12576626)
chr6 (64-131)||(16913294-16913362)
chr6 (86-139)||(15590168-15590222)
chr6 (86-139)||(21507897-21507951)
chr6 (87-139)||(35219992-35220045)
chr6 (64-131)||(4663900-4663968)
chr6 (64-139)||(10744545-10744621)
chr6 (68-131)||(32457616-32457680)
chr6 (64-110)||(34020584-34020630)
chr6 (60-125)||(15175765-15175830)
chr6 (87-131)||(19759777-19759822)
chr6 (68-109)||(31804242-31804283)
chr6 (49-123)||(35038552-35038622)
[»] scaffold0012 (1 HSPs)
scaffold0012 (64-110)||(244600-244646)
[»] scaffold0045 (1 HSPs)
scaffold0045 (64-123)||(9736-9796)
[»] scaffold0238 (1 HSPs)
scaffold0238 (61-139)||(15767-15845)
[»] scaffold0312 (1 HSPs)
scaffold0312 (86-119)||(6115-6148)
[»] scaffold0536 (1 HSPs)
scaffold0536 (86-125)||(2878-2918)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 5237848 - 5237986
Alignment:
Q  8 tgatatgaagccaccgacccataaactct------ctctctcacactctagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagg 101  Q
    |||||||||||||||||||||||||||||      |||||||| || |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  5237848 tgatatgaagccaccgacccataaactctctctctctctctcaaaccctagtcgtcgcaacatttattcttcttgatccaccaaagaggggtgatttagg 5237947  T
Q  102 gtcaattttgactcaaaatcacccttctaaattgttttg 140  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  5237948 gtcaaatttgactcaaaatcacccttctaaattgttttg 5237986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 37714459 - 37714548
Alignment:
Q  50 tagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||||||| ||| ||||||||| | |||||| ||  | ||||||||||    
T  37714459 tagtcgtcataacttttcttcttcttgatatactaaagaggggtgatttatggttaattttgacccgaaatcatcccaccaaattgtttt 37714548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 28015335 - 28015398
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||| ||||| |||||||    
T  28015335 atccactaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgtttt 28015398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 24470361 - 24470429
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||| ||| ||||||| ||||||||||| |||||    
T  24470361 tttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaa 24470429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 24475309 - 24475377
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||| ||| ||||||| ||||||||||| |||||    
T  24475309 tttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaa 24475377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 49166893 - 49166969
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||| |||||||  |||||||||| ||||| |||||||    
T  49166893 tttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctctaacttgtttt 49166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 21954982 - 21954924
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcac 123  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||| || |||||||||    
T  21954982 tttcttcttcttg-tccaccaaagaagggtgatttagggtcaattttaacccaaaatcac 21954924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 47749700 - 47749767
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttcta 130  Q
    |||||||| ||| |||||| |||||||||||||||| |||||| ||||||| ||||||||||| ||||    
T  47749700 tttcttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctcta 47749767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 21603441 - 21603494
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||||||||  |||| ||||| ||| |||||||||    
T  21603441 agaggggtgatttagggtcaattttgaccaaaaagcacccctctgaattgtttt 21603494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 24988497 - 24988458
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  24988497 agaggggtgattcagggtcaattttgacccaaaatcaccc 24988458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 29804811 - 29804748
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| ||||||||||| ||||||||||| ||||||| | ||||||||| ||||||| |||||    
T  29804811 atccaccaaagaggggtggtttagggtcaatttttgaccccaaatcacccctctaaatcgtttt 29804748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 10574363 - 10574413
Alignment:
Q  90 gggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||| |||||||||| ||  |||||||||    
T  10574363 gggtgatttagggtcaattttgactcaaaaatcacccctccgaattgtttt 10574413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 21990639 - 21990693
Alignment:
Q  86 agaggggtgatttagggtcaattttgact-caaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||||  |||||||||| ||  |||||||||    
T  21990639 agaggggtgatttagggtcaattttgactgaaaaatcacccctccgaattgtttt 21990693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 37399582 - 37399628
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  37399582 tttcttcttcttcatccaccaaagacgggtgatttagggttaatttt 37399628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 40775233 - 40775279
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||| ||| |||||  |||||||||||||||||||||||||||    
T  40775233 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 40775279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 34595798 - 34595737
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt-gactcaaaatcacc 124  Q
    |||||| ||||| |||||| ||||||| ||| ||||||||||||||| ||||| ||||||||    
T  34595798 tttctttttcttcatccaccaaagaggagtggtttagggtcaattttcgactctaaatcacc 34595737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 42644654 - 42644687
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||| |||||||||||||||||    
T  42644654 agaggggtgatttaggatcaattttgactcaaaa 42644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 45457699 - 45457666
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  45457699 agaggggtgatttagggtcaattttgacgcaaaa 45457666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 46026172 - 46026139
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  46026172 agaggggtgatttagggtcaattttgacccaaaa 46026139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 48304538 - 48304505
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  48304538 agaggggtgatttagggtcaattttgacccaaaa 48304505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 8611770 - 8611730
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtc 104  Q
    |||||||| ||| |||||| |||||||||||||||||||||    
T  8611770 tttcttctccttcatccacgaaagaggggtgatttagggtc 8611730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 21329443 - 21329368
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||  || |||||| ||||||||||| ||||||||||| ||||||| | ||||||||| ||||||| |||||    
T  21329443 tttcttctcatttatccaccaaagaggggtggtttagggtcaatttttgac-ccaaatcacccctctaaatcgtttt 21329368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 22747648 - 22747596
Alignment:
Q  88 aggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||| | |||||||||| || || |||||||    
T  22747648 aggggtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt 22747596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 23732521 - 23732481
Alignment:
Q  84 aaagaggggtgatttagggtcaa-ttttgactcaaaatcac 123  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  23732521 aaagaggggtgatttaaggtcaatttttgactcaaaatcac 23732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 35141881 - 35141833
Alignment:
Q  84 aaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    ||||| ||||||||||||||||| |||||||  ||||||||||||||||    
T  35141881 aaagaagggtgatttagggtcaatttttgaccaaaaatcacccttctaa 35141833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 38649506 - 38649438
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||  ||| ||| |||||| ||||||||||||| ||||| ||||||| ||||||||||| |||||    
T  38649506 tttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcacccctctaa 38649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 39707272 - 39707304
Alignment:
Q  90 gggtgatttagggtcaattttgactcaaaatca 122  Q
    |||||||||||||||||||||||| ||||||||    
T  39707272 gggtgatttagggtcaattttgacccaaaatca 39707304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 41287935 - 41287975
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaa-aatcaccc 125  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  41287935 agaggggtgatttagggtcaattttgacccaataatcaccc 41287975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 41748649 - 41748573
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt-gactcaaaatcacccttctaaattgtttt 139  Q
    ||||||| |||| || ||||||||||  |||||||| |||||||||| ||  ||||||||| | |||||||||||||    
T  41748649 tttcttcatcttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcactcctctaaattgtttt 41748573  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 33486718 - 33486642
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||  ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  33486718 tttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacccatctaacttgtttt 33486642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 31645795 - 31645871
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| ||||| |||||||||||||||||||||||| ||||||  ||||||||||| ||||| |||||||    
T  31645795 tttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgtttt 31645871  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 6887326 - 6887250
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||    
T  6887326 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctctaacttgtttt 6887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 2415393 - 2415442
Alignment:
Q  91 ggtgatttagggtcaatttt-gactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcacccttctaacttgtttt 2415442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 4070529 - 4070582
Alignment:
Q  72 tcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    |||| |||||| ||| |||||||||||||||||| ||||||| |||||||||||    
T  4070529 tcttcatccaccaaaaaggggtgatttagggtcatttttgacccaaaatcaccc 4070582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 34894064 - 34893996
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  |||||||||||||||| |||||| ||||||| ||||||||||| |||||    
T  34894064 tttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctctaa 34893996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 29310476 - 29310421
Alignment:
Q  85 aagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||| ||||||  ||||||||||| ||||| |||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgtttt 29310421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 7771949 - 7771895
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  7771949 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 7771895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 31255422 - 31255344
Alignment:
Q  61 acttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||| |||| |||||||| ||  || ||||||||||||||||||| |||||| || ||||| || || ||||||||||    
T  31255422 actttacttcgtcttgatctaccgaacaggggtgatttagggtcaactttgacccataatcaaccctccaaattgtttt 31255344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 8957176 - 8957221
Alignment:
Q  63 ttttcttcttcttgatccactaaagaggggtgatttagggtcaatt 108  Q
    |||||||| |||| |||||| ||||||||||| |||||||||||||    
T  8957176 ttttcttcatcttcatccaccaaagaggggtggtttagggtcaatt 8957221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 17331306 - 17331339
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  17331306 agaggggtgatttagggtcaattttgacccaaaa 17331339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 18323575 - 18323530
Alignment:
Q  55 gtcgcaacttttcttcttcttgatccactaaagaggggtgatttag 100  Q
    ||||||| ||||||||||||||||| || |||||| ||||||||||    
T  18323575 gtcgcaatttttcttcttcttgatctaccaaagagcggtgatttag 18323530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 23882259 - 23882226
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    ||||||||||||||||||||||||||| ||||||    
T  23882259 agaggggtgatttagggtcaattttgattcaaaa 23882226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 33164611 - 33164578
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||| |||||||||||||||||||    
T  33164611 agaggggtgatttatggtcaattttgactcaaaa 33164578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 37424958 - 37425019
Alignment:
Q  63 ttttcttcttcttgatccactaaagaggggtgatttagggtcaattt-tgactcaaaatcac 123  Q
    ||||||| | ||| |||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  37424958 ttttcttttccttcatccaccaaagaggggtgatttatggtcaatttctgacccaaaatcac 37425019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 8812300 - 8812232
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    ||||||| |||| |||||| ||| ||||||||| ||||||||| |||| || ||||||||||| |||||    
T  8812300 tttcttcatcttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcacccctctaa 8812232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 17096385 - 17096345
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaa-aatcaccc 125  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  17096385 agaggggtgatttagggtcaattttgacccaataatcaccc 17096345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 41554472 - 41554528
Alignment:
Q  84 aaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||| |||| ||||||  ||||||||||| ||||| |||||||    
T  41554472 aaagaggggtgatttaggatcaatttttgatccaaaatcacccctctaacttgtttt 41554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 6510441 - 6510526
Alignment:
Q  52 gtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||||||||| ||||||||| || |||||||  |||||||||||||||||| || |||||||||||||| ||||| ||||    
T  6510441 gtcgtcgctacttttctttttcttgatctacaaaagagg--tgatttagggtcaattttcacgcaaaatcacccttccaaattatttt 6510526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 3390398 - 3390474
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  3390398 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttt 3390474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 10589004 - 10589080
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||| |||| |||||| ||| ||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  10589004 tttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttt 10589080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 25516460 - 25516528
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaat-tttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  25516460 tttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctctaa 25516528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 25771411 - 25771487
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  25771411 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttt 25771487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 40125355 - 40125431
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||| |||||||||||||||||||| || ||||||| ||||||||||| ||||| |||||||    
T  40125355 tttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctctaacttgtttt 40125431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 36867986 - 36868040
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  36867986 agaggggtgatttagggtcaattttgactcaaaaatcacccctctgaattgtttt 36868040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 3602951 - 3603027
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||| |||||||||| |||||| ||||||||||||||||||| ||||| |||||||    
T  3602951 tttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcacccctctaacttgtttt 3603027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 37883619 - 37883687
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaattttgact-caaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||| | | ||||||||||| |||||    
T  37883619 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttaatccaaaatcacccctctaa 37883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 38450184 - 38450244
Alignment:
Q  52 gtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttga 112  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||  || ||||||||    
T  38450184 gtcgtcacaacttttcttcttcttaatctactaaagaggggtgatttaatgttaattttga 38450244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 41176828 - 41176896
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||||||| ||||||| ||||| ||||| |||||    
T  41176828 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccacccatctaa 41176896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 3464925 - 3464971
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||| ||| |||||| |||||||||||||||||||||||||||    
T  3464925 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 3464971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 15674104 - 15674046
Alignment:
Q  82 ctaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||    
T  15674104 ctaaagaggggtgatttagggtcaatttttgacccaaaatcactcctctaacttgtttt 15674046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 6089859 - 6089927
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  |||||||||||||||| |||||| ||||||| ||||||||||| |||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaa 6089927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 27024287 - 27024211
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtca-attttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||| ||||||||||||||||  ||||||| ||||||||||| ||||| |||||||    
T  27024287 tttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctctaacttgtttt 27024211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 27191483 - 27191415
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| |||||||| |||||||||||||| ||||||| | ||||||||| |||||    
T  27191483 tttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaa 27191415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 27841297 - 27841229
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| |||||||| |||||||||||||| ||||||| | ||||||||| |||||    
T  27841297 tttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaa 27841229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 44167857 - 44167789
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||| || |||||| ||||||| ||||||||||| |||||    
T  44167857 tttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctctaa 44167789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 44951468 - 44951512
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatt 108  Q
    |||||||| ||| |||||| |||||||||||||||||||||||||    
T  44951468 tttcttctccttcatccaccaaagaggggtgatttagggtcaatt 44951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 7582260 - 7582201
Alignment:
Q  59 caacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaa 118  Q
    ||||||||||||||||||| | ||  || | |||||||||||||||||||||||| ||||    
T  7582260 caacttttcttcttcttgacctaccgaaaatgggtgatttagggtcaattttgacacaaa 7582201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 19581138 - 19581083
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||||||||||||||||| ||||||| |||| || ||||||||||| |||||    
T  19581138 atccactaaagaggggtgattttgggtcaatttttaacacaaaatcacccctctaa 19581083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 43566843 - 43566905
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcaccct 126  Q
    |||||||| ||| |||||| |||||||||||| |||||||||| ||||||| ||||||||||||    
T  43566843 tttcttctccttcatccaccaaagaggggtga-ttagggtcaatttttgacccaaaatcaccct 43566905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 11938002 - 11937948
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  11938002 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 11937948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 20561275 - 20561221
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  20561275 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 20561221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 43474271 - 43474217
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  43474271 agaggggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttt 43474217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 5754266 - 5754299
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  5754266 agaggggtgatttagggtcaattttgacccaaaa 5754299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 7073091 - 7073058
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  7073091 agaggggtgatttagggtcaattttgacccaaaa 7073058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 7640481 - 7640436
Alignment:
Q  87 gaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 7640436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 12704665 - 12704698
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  12704665 agaggggtgatttagggtcaattttgacccaaaa 12704698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 12891232 - 12891199
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  12891232 agaggggtgatttagggtcaattttgacccaaaa 12891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 20598789 - 20598724
Alignment:
Q  74 ttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| ||||||||||| ||||||| |||||||||||||  |||||  ||||||  |||||||||    
T  20598789 ttgatctactaaagagggatgatttaaggtcaattttgacataaaattgcccttccgaattgtttt 20598724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 32015198 - 32015231
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  32015198 agaggggtgatttagggtcaattttgacccaaaa 32015231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 38535448 - 38535415
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  38535448 agaggggtgatttagggtcaattttgacccaaaa 38535415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 13268553 - 13268601
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    ||||| ||||||||||||||||| ||||| ||||||  |||||||||||    
T  13268553 atccattaaagaggggtgatttatggtcatttttgaaccaaaatcaccc 13268601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 29812743 - 29812695
Alignment:
Q  84 aaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||| |||||||||||||||| ||||||| ||||||||||| |||||    
T  29812743 aaagagaggtgatttagggtcaatttttgacacaaaatcacccctctaa 29812695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 42105887 - 42105839
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacc 124  Q
    |||||| ||||||||||| ||||||||||| ||||||| ||||||||||    
T  42105887 atccaccaaagaggggtgctttagggtcaatttttgacccaaaatcacc 42105839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 13691907 - 13691830
Alignment:
Q  64 tttcttcttcttgatccactaaaga-ggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||| |||||||||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||| |||||    
T  13691907 tttcttcttcttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcacccctctaaatcgtttt 13691830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 52839402 - 52839457
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  52839402 atccattaaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaa 52839457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 44514138 - 44514077
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacc 124  Q
    |||||||  ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44514138 tttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 18889031 - 18889107
Alignment:
Q  63 ttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||| ||| ||| || ||||||||||||||||| |||||||||| |  |||||||||| ||| |||||||||    
T  18889031 ttttcttctcctttatctaccaaagaggggtgatttagagtcaattttggccgaaaatcacccctctgaattgtttt 18889107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 22345060 - 22344984
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  |||||||||||||||||| |||| ||||||| ||||||||||| ||||| |||||||    
T  22345060 tttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctctaacttgtttt 22344984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 33125943 - 33125895
Alignment:
Q  91 ggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  33125943 ggtgatttagggtcaattttgacccaaaatcactcatctaaattgtttt 33125895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 14717390 - 14717327
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcaccct 126  Q
    |||||||| ||| |||||| ||||||||||||||||||||||| |||||||| ||| |||||||    
T  14717390 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacttaaattcaccct 14717327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 22032231 - 22032161
Alignment:
Q  71 ttcttgatccactaaagaggggtgatttagggtcaa-ttttgactc-aaaatcacccttctaaattgtttt 139  Q
    ||||| |||||| |||||||| |||||||||||||| ||||||| | |||||||||| |||||||||||||    
T  22032231 ttcttcatccaccaaagagggatgatttagggtcaatttttgacccaaaaatcacccctctaaattgtttt 22032161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 27469880 - 27469834
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  27469880 tttcttcttcttcatccattaaagaggggtgatttaaggtcaatttt 27469834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 33939145 - 33939091
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  33939145 agaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttt 33939091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 40862955 - 40862910
Alignment:
Q  94 gatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||    
T  40862955 gatttagggtcaattttgacccaaaatcacctttctaaatagtttt 40862910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 34335265 - 34335206
Alignment:
Q  61 acttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaat 120  Q
    ||||||||||||||||||  ||| | |||| |||||||| |||||||||| |||||||||    
T  34335265 acttttcttcttcttgatatactgatgaggagtgatttatggtcaattttaactcaaaat 34335206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 24114844 - 24114782
Alignment:
Q  62 cttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacc 124  Q
    |||||||||||||||||  | | ||||| ||||||||| ||||||||| ||| ||||||||||    
T  24114844 cttttcttcttcttgatttattgaagagcggtgatttatggtcaatttcgacccaaaatcacc 24114782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 33487173 - 33487119
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  33487173 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 33487119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 424434 - 424401
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  424434 agaggggtgatttagggtcaattttgacccaaaa 424401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 7995703 - 7995670
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  7995703 agaggggtgatttagggtcaattttgacccaaaa 7995670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 12871599 - 12871632
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  12871599 agaggggtgatttagggtcaattttgacccaaaa 12871632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 28678273 - 28678240
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  28678273 agaggggtgatttagggtcaattttgacccaaaa 28678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 31427327 - 31427250
Alignment:
Q  46 actctagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcac 123  Q
    |||||| ||||| ||||||||||| | ||||||| | ||| ||| ||||||||| | |||||||||||  ||||||||    
T  31427327 actctaatcgtcacaacttttcttttccttgatctattaatgagaggtgatttaagatcaattttgaccaaaaatcac 31427250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 42276335 - 42276388
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||| | ||||||| ||||||||||| ||  |||||||||    
T  42276335 agaggggtgatttagggttatttttgacacaaaatcacccctccgaattgtttt 42276388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 8937612 - 8937644
Alignment:
Q  90 gggtgatttagggtcaattttgactcaaaatca 122  Q
    |||||||||||||||||||||||| ||||||||    
T  8937612 gggtgatttagggtcaattttgacccaaaatca 8937644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 32784088 - 32784140
Alignment:
Q  88 aggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  32784088 aggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 32784140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 32878684 - 32878728
Alignment:
Q  84 aaagaggggtgatttagggtcaattttgactcaaaatcacccttc 128  Q
    ||||| |||||||||||||| ||||||||| |||||||| |||||    
T  32878684 aaagatgggtgatttagggttaattttgacccaaaatcatccttc 32878728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 46589157 - 46589205
Alignment:
Q  79 ccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcaccct 126  Q
    |||| |||||||||||||||| | |||| ||||||||||||||||||||    
T  46589157 ccaccaaagaggggtgatttatgatcaatttttgactcaaaatcaccct 46589205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 50108074 - 50108006
Alignment:
Q  71 ttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||  ||||||||||   ||||||||||||||||||||  |||||||||| || | ||||||||    
T  50108074 ttcttgatttactaaagaggaaggatttagggtcaattttgacctaaaatcacccatccagattgtttt 50108006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 52839507 - 52839555
Alignment:
Q  84 aaagaggggtgatttagggtcaatttt-gactcaaaatcacccttctaa 131  Q
    |||||||||||||||| | |||||||| ||| |||||||||||||||||    
T  52839507 aaagaggggtgatttatgatcaatttttgacccaaaatcacccttctaa 52839555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 9661819 - 9661895
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  9661819 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttt 9661895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 46829365 - 46829417
Alignment:
Q  54 cgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaa 106  Q
    |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  46829365 cgtcacaacttttcttcttcttcatctactaaagaggggtgatttagggtcaa 46829417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 3673589 - 3673665
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||  || |||||| ||||||||||||||||||||||| ||||||| | ||||||||| ||||||| |||||    
T  3673589 tttcttctcatttatccaccaaagaggggtgatttagggtcaatttttgaccccaaatcacccctctaaatcgtttt 3673665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 4634249 - 4634325
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  |||||||||||||||| |||||| ||||||| ||||||||||| ||||| |||||||    
T  4634249 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaacttgtttt 4634325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 7242913 - 7242841
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| |||||| ||| ||||| ||||||||||||| ||||||| |||||||||| |||||| |||||||    
T  7242913 ttcttctttatccaccaaaaaggggcgatttagggtcaatttttgacccaaaatcacctttctaacttgtttt 7242841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 46729054 - 46728992
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  46729054 atccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc-tctaatttgtttt 46728992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 7454641 - 7454719
Alignment:
Q  46 actctagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacc 124  Q
    |||||| ||||| | | ||||||||||| ||||| || |||||||||  ||||||||| |||||||||| |||||||||    
T  7454641 actctaatcgtcaccatttttcttcttcatgatctaccaaagaggggcaatttagggttaattttgacttaaaatcacc 7454719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 38431664 - 38431602
Alignment:
Q  61 acttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcac 123  Q
    ||||||||||||||||||| ||| ||||| ||||||||||| |||||| ||||  ||||||||    
T  38431664 acttttcttcttcttgatctactgaagagaggtgatttaggatcaattctgaccaaaaatcac 38431602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 43156741 - 43156811
Alignment:
Q  63 ttttcttcttcttgatccactaaagaggggtgattta-gggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    ||||||||| ||| |||||| |||||||||||||||| ||||||| ||||||| ||||||||||| |||||    
T  43156741 ttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcacccctctaa 43156811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 43244524 - 43244470
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  43244524 agaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttt 43244470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 22757072 - 22757105
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    ||||||||||||||||||||||||||||||||||    
T  22757072 agaggggtgatttagggtcaattttgactcaaaa 22757105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 1657718 - 1657650
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  |||||| |||||||||||||||| ||||||| ||||||||||| |||||    
T  1657718 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaa 1657650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 11817038 - 11817114
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||| |||||  ||||||||||| |||||||| || ||||||| ||||||||||| |||| || |||||    
T  11817038 tttcttcttcttcatccatcaaagaggggtggtttagggttaagttttgacccaaaatcacccctctacatcgtttt 11817114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 16991838 - 16991906
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  |||||| |||||||||||||||| ||||||| ||||||||||| |||||    
T  16991838 tttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatctaa 16991906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 54420860 - 54420800
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcac 123  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||| ||||||| |||||||||    
T  54420860 tttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcac 54420800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 56061953 - 56062016
Alignment:
Q  61 acttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    ||||||||||||||| ||| ||  |||||||||||||||||||||| ||||||  ||||||||||    
T  56061953 acttttcttcttctt-atctaccgaagaggggtgatttagggtcaactttgaccgaaaatcaccc 56062016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 56171823 - 56171878
Alignment:
Q  58 gcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgac 113  Q
    |||||||||||| | |||||||||  ||||| ||||||||| ||||||||||||||    
T  56171823 gcaacttttcttttccttgatccatcaaagatgggtgattttgggtcaattttgac 56171878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 14542658 - 14542584
Alignment:
Q  66 tcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| ||| |||||  ||||||||||||||||||||||| ||||||| |||||||| |  ||||| |||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttt 14542584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 25658145 - 25658199
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||| ||||||||||| |||||||||  || ||||||||||    
T  25658145 agaggggtgatttagggttaattttgactcaaaaatcacctctccaaattgtttt 25658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 40859627 - 40859669
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa 106  Q
    ||||||| |||| |||||| |||||||||||||||||||||||    
T  40859627 tttcttcgtcttcatccaccaaagaggggtgatttagggtcaa 40859669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 394416 - 394363
Alignment:
Q  87 gaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  394416 gaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 394363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 22049543 - 22049506
Alignment:
Q  90 gggtgatttagggtcaattttgactcaaaatcaccctt 127  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  22049543 gggtgatttagggttaattttgacccaaaatcaccctt 22049506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 27394810 - 27394851
Alignment:
Q  88 aggggtgatttagggtcaattttgactc-aaaatcacccttc 128  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  27394810 aggggtgatttagggtcaattttgacccaaaaatcacccttc 27394851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 41486548 - 41486609
Alignment:
Q  71 ttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||||||  |||||||||| |||||||||||| ||||||  ||||||||||| |||||    
T  41486548 ttcttgatccatcaaagaggggttatttagggtcaatttttgatccaaaatcacccctctaa 41486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 1646089 - 1646021
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatt-ttgactcaaaatcacccttctaa 131  Q
    |||||||||||| || ||| |||||| | ||||||||||| |||| ||||| ||||||||||| |||||    
T  1646089 tttcttcttcttcattcaccaaagagagatgatttagggttaattgttgacccaaaatcacccctctaa 1646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 8712510 - 8712562
Alignment:
Q  88 aggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  8712510 aggggtgatttagggtcaattttgacccaaaaatcacccctcataattgtttt 8712562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 28588527 - 28588595
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  | ||| ||||||||||||||||| ||||||| ||||||||||| |||||    
T  28588527 tttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcacccctctaa 28588595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 31521962 - 31522014
Alignment:
Q  88 aggggtgatttagggtcaattttga-ctcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||||| || |||||||||| ||  |||||||||    
T  31521962 aggggtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttt 31522014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 39797809 - 39797871
Alignment:
Q  49 ctagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgac 113  Q
    ||||||||||| | |||||||||||||||||||  |||||  ||||||||| |||||||||||||    
T  39797809 ctagtcgtcgcca-ttttcttcttcttgatccatcaaaga-tggtgatttatggtcaattttgac 39797871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 47465884 - 47465960
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||||  |||| ||||||||| || ||||| ||||| |||||||   |||||||||||||| ||||||||    
T  47465884 tttcttcttcttcttccattaaagagggatggtttagagtcaatttttgacctcaaatcacccttctacattgtttt 47465960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 1165544 - 1165468
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  1165544 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttt 1165468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 4019588 - 4019628
Alignment:
Q  84 aaagaggggtgatttagggtcaattttgactcaaaatcacc 124  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4019588 aaagaggggtgatttagggtcaattttgactcaaaatcacc 4019628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 20201206 - 20201138
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  20201206 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 20201138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 20203388 - 20203320
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  20203388 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 20203320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 27831082 - 27831145
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaa 131  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||  |||||||||| |||||    
T  27831082 ttcttcttcatccaccaaagaggggtgatttggggtcaattttgacctaaaatcacccatctaa 27831145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 37451669 - 37451754
Alignment:
Q  40 tctcacactctagtcgtcgcaacttttctt-cttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacc 124  Q
    ||||| || |||| |||||||||||||||| || | ||||| || |||||||||| ||||||||||||||||||| | ||||||||    
T  37451669 tctcaaaccctagccgtcgcaacttttctttctccgtgatctaccaaagaggggtaatttagggtcaattttgacccgaaatcacc 37451754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 42106077 - 42106145
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    ||||||| |||| |||||| ||||||||||||||||||||||| |||||||  |||||||||| |||||    
T  42106077 tttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcacccatctaa 42106145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 50519756 - 50519824
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||||| |||||    
T  50519756 tttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctctaa 50519824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 40796999 - 40797074
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||| ||||  ||||| ||| |||||||||||||||| ||||||||  ||||||||||| ||||| |||||||    
T  40796999 tttcttcatcttcctccaccaaaaaggggtgatttagggttaattttgagccaaaatcacccctctaacttgtttt 40797074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 22286897 - 22286851
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||| ||| |||||| |||||||||||||||||||||||||||    
T  22286897 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 22286851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 1806605 - 1806532
Alignment:
Q  67 cttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||| |||||| ||||||||||| ||||||||||| ||||||  | ||||||||| ||||||| |||||    
T  1806605 cttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcacccctctaaatcgtttt 1806532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 40462143 - 40462067
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||  || |||||| |||||| |||||||||| ||||| ||||||| ||||||||||| ||||| |||||||    
T  40462143 tttcttctctttcatccaccaaagagtggtgatttagagtcaaattttgacccaaaatcacccctctaacttgtttt 40462067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 43029649 - 43029725
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtca-attttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| ||| |||||  |||||||||||||||||| |||  ||||||| ||||||||||| ||||| |||||||    
T  43029649 tttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctctaacttgtttt 43029725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 47914731 - 47914688
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaat 107  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||    
T  47914731 tttcttctccttcatccaccaaagaggggtgatttagggtcaat 47914688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 14585440 - 14585494
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||| |||||||||||| | |||||||| | |||||||||||||    
T  14585440 agaggggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttt 14585494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 20251621 - 20251686
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaa--ttttgactcaaaatcacccttctaa 131  Q
    |||| ||| |||||| ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  20251621 ttctccttcatccaccaaagaggggtgatttagggtcgatttttttacccaaaatcacccttctaa 20251686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 30156432 - 30156378
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||  |||||||||    
T  30156432 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt 30156378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 43839664 - 43839618
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||| ||| || ||||||||| |||||||||||||||||||||    
T  43839664 tttcttctccttcattcactaaagatgggtgatttagggtcaatttt 43839618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 11819061 - 11819094
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  11819061 agaggggtgatttagggtcaattttgacccaaaa 11819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 13702123 - 13702090
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  13702123 agaggggtgatttagggtcaattttgacccaaaa 13702090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 19861428 - 19861395
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||| |||||||||||||||||||||||||||||    
T  19861428 agagaggtgatttagggtcaattttgactcaaaa 19861395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 31462897 - 31462864
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  31462897 agaggggtgatttagggtcaattttgacccaaaa 31462864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 36691950 - 36691917
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  36691950 agaggggtgatttagggtcaattttgacccaaaa 36691917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 48400877 - 48400910
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  48400877 agaggggtgatttagggtcaattttgacccaaaa 48400910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 53155581 - 53155548
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  53155581 agaggggtgatttagggtcaattttgacccaaaa 53155548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 106188 - 106148
Alignment:
Q  85 aagaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    ||||||||||||||||||||||||| ||  |||||||||||    
T  106188 aagaggggtgatttagggtcaatttcgatccaaaatcaccc 106148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 533919 - 533995
Alignment:
Q  49 ctagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    ||||||||| ||| |||||||||||| |||| |  ||||| |||||| ||| | ||| |||| ||||||||||||||    
T  533919 ctagtcgtcacaatttttcttcttctagatctatcaaagacgggtgacttacgttcattttttactcaaaatcaccc 533995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 1220343 - 1220295
Alignment:
Q  84 aaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  1220343 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaa 1220295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 2362594 - 2362562
Alignment:
Q  90 gggtgatttagggtcaattttgactcaaaatca 122  Q
    |||||||||||||||||||||||||| ||||||    
T  2362594 gggtgatttagggtcaattttgactccaaatca 2362562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 5327653 - 5327574
Alignment:
Q  59 caacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||| |||||||||||| || |||||| | |||| | |||| |||||||||| |||||||||| |  ||||||||||    
T  5327653 caactttt-ttcttcttgatctaccaaagagagatgatctggggttaattttgacttaaaatcacccctgcaaattgtttt 5327574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 21086088 - 21086044
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatt 108  Q
    |||||||| ||| ||||||||||||||||| |||| |||||||||    
T  21086088 tttcttctcctttatccactaaagaggggtaattttgggtcaatt 21086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 35501906 - 35501839
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt-gactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| |||||||| ||||||||||| |||||| ||| ||||||||||| |||||    
T  35501906 tttcttctccttcatccaccaaagaggg-tgatttagggttaatttttgacccaaaatcacccctctaa 35501839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 37051590 - 37051666
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||  || |||||| |||||||| |||||||||||||| ||||||| |  |||||||| ||||||| |||||    
T  37051590 tttcttctctttcatccaccaaagagggatgatttagggtcaatttttgaccctgaatcacccctctaaatcgtttt 37051666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 41882556 - 41882488
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  ||||||| ||||||||||||||| ||||||| |||||| |||| |||||    
T  41882556 tttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctctaa 41882488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 37658945 - 37659008
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  37658945 atccaccaaagaggggtgatttagggtcaatttttgacacaaaatcacccctctaatttgtttt 37659008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 14531036 - 14530980
Alignment:
Q  84 aaagaggggtgatttagggtcaatttt-gactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  14531036 aaagaggggtggtttagggtcaatttttgactccaaatcacccttctaaatcgtttt 14530980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 15665525 - 15665581
Alignment:
Q  84 aaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||    
T  15665525 aaagaggggtgatttagggtcaacttttgacacaaaatcacccctctaacttgtttt 15665581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 32061760 - 32061835
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgttt 138  Q
    |||||||| ||| |||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||| ||||    
T  32061760 tttcttctccttcatccaccaaagaggggtagtttagggtcaatttttgaccccaaatcacccttctaaatcgttt 32061835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 32256862 - 32256793
Alignment:
Q  72 tcttgatccactaaagaggggtgatttagggtcaa--ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||| |||||| |||||||||||||||||||||||  |||| || ||||||||||| ||||| |||||||    
T  32256862 tcttcatccaccaaagaggggtgatttagggtcaatttttttacccaaaatcacccctctaacttgtttt 32256793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 9269987 - 9270055
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| |||||||||||||||| | |||| ||||||| ||||||||||| |||||    
T  9269987 tttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccctctaa 9270055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 10042731 - 10042795
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||| ||| |||||| |||||||||||||||| |||||| ||||||| ||||||||||| |||||    
T  10042731 ttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctaa 10042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 16937487 - 16937411
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||  ||| |||||| ||||||||||||||||||||||| ||||||  |||||||| || ||||| |||||||    
T  16937487 tttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcatccctctaacttgtttt 16937411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 31874050 - 31874118
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||  |||||| |||||||||||||||| ||||||| ||||||||||| |||||    
T  31874050 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaa 31874118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 32920618 - 32920694
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaat-tttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| |||| | | ||||||||  ||||||| |||||    
T  32920618 tttcttcttctttatccaccaaagaggggtggtttagggtcaatctttgcccctaaatcaccgctctaaatcgtttt 32920694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 25939793 - 25939758
Alignment:
Q  91 ggtgatttagggtcaattttgactcaaaatcaccct 126  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25939793 ggtgatttagggtcaattttgacccaaaatcaccct 25939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 26937504 - 26937559
Alignment:
Q  77 atccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||| |||||||||| ||||||||| || ||||||||||||||||||| |||||    
T  26937504 atccaccaaagaggggttatttagggttaagttttgactcaaaatcacccctctaa 26937559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 14327445 - 14327491
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||| ||| |||||| ||||||||||| |||||||||||||||    
T  14327445 tttcttctccttcatccaccaaagaggggtggtttagggtcaatttt 14327491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 27534543 - 27534501
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||| | |||| |||||||||||||||||||||||||||    
T  27534543 ttcttcttcaaccacgaaagaggggtgatttagggtcaatttt 27534501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 44295284 - 44295358
Alignment:
Q  66 tcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| ||| |||||  ||||||||||||||||||||||| ||||||| |||||||| |  ||||| |||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttt 44295358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 1810370 - 1810337
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  1810370 agaggggtgatttagggtcaattttgacccaaaa 1810337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 31407899 - 31407866
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  31407899 agaggggtgatttagggtcaattttgacccaaaa 31407866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 37612631 - 37612664
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  37612631 agaggggtgatttagggtcaattttgacccaaaa 37612664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 2968513 - 2968545
Alignment:
Q  92 gtgatttagggtcaattttgactcaaaatcacc 124  Q
    |||||||| ||||||||||||||||||||||||    
T  2968513 gtgatttatggtcaattttgactcaaaatcacc 2968545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 9992631 - 9992699
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| || || || || |||||||||||||||||| ||||||| ||||||||||| |||||    
T  9992631 tttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcacccctctaa 9992699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 10147924 - 10147964
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaa-aatcaccc 125  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  10147924 agaggggtgatttagggtcaattttgacccaataatcaccc 10147964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 17019114 - 17019146
Alignment:
Q  107 ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||| |||||||||||||||||||||||||    
T  17019114 ttttgacccaaaatcacccttctaaattgtttt 17019146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 17549551 - 17549583
Alignment:
Q  107 ttttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||| |||||||||||||||||||||||||    
T  17549551 ttttgacccaaaatcacccttctaaattgtttt 17549583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 18190991 - 18190916
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| | ||| ||||||||||||||| || ||||||||||| ||||||||| ||||||||  ||||||| |||||    
T  18190991 tttcttttccttcatccactaaagaggg-tggtttagggtcaatttttgactccaaatcaccaatctaaatcgtttt 18190916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 42260879 - 42260966
Alignment:
Q  51 agtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    ||||||| ||||||||||||||||||||| || ||| |  ||||||||| ||| || |||||| |||||| |||| || | ||||||||    
T  42260879 agtcgtcacaacttttcttcttcttgatctaccaaaaattggtgattta-ggtaaactttgacccaaaattacccctcgagattgtttt 42260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 3915 - 3846
Alignment:
Q  52 gtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatca 122  Q
    |||||| |||||||||||||| |||||| || |||||||| ||||||| ||||||||||||||| ||||||    
T  3915 gtcgtcacaacttttcttctt-ttgatctacaaaagagggttgatttatggtcaattttgactcgaaatca 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 947 - 881
Alignment:
Q  60 aacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcaccct 126  Q
    |||||||||||||||||||| | |||| | | |||||||  ||||||||||||||||||||||||||    
T  947 aacttttcttcttcttgatctattaaaaaagagtgatttttggtcaattttgactcaaaatcaccct 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 8686 - 8620
Alignment:
Q  60 aacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcaccct 126  Q
    |||||||||||||||||||| | |||| | | |||||||  ||||||||||||||||||||||||||    
T  8686 aacttttcttcttcttgatctattaaaaaagagtgatttttggtcaattttgactcaaaatcaccct 8620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 7049217 - 7049275
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcaccc 125  Q
    |||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7049217 ttctccttcatccaccaaagaggggtgatttagggtcaacttttgactcaaaatcaccc 7049275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 12576626 - 12576550
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||| | ||| |||||| ||||||||||||||||||||||| ||||||| | ||||||||| ||||| |||||||    
T  12576626 tttcttttccttcatccacgaaagaggggtgatttagggtcaatttttgaccctaaatcacccctctaacttgtttt 12576550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 16913294 - 16913362
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||||||||||| ||||||| | ||||||||| |||||    
T  16913294 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcacccctctaa 16913362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 15590222 - 15590168
Alignment:
Q  86 agaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  15590222 agaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttt 15590168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 21507951 - 21507897
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaa-atcacccttctaaattgtttt 139  Q
    |||||||||||||||||||||||||||| |||| ||||||| || ||||||||||    
T  21507951 agaggggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttt 21507897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 35220045 - 35219992
Alignment:
Q  87 gaggggtgatttagggtcaattttgactc-aaaatcacccttctaaattgtttt 139  Q
    ||||||||||||||||||||||||||||| |||||||||| || || |||||||    
T  35220045 gaggggtgatttagggtcaattttgactcaaaaatcacccctccaagttgtttt 35219992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 4663968 - 4663900
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||| ||| |||||| ||||||||||||||  ||||||| ||||||| ||||||||||| |||||    
T  4663968 tttcttctccttcatccaccaaagaggggtgattgtgggtcaatttttgacccaaaatcacccctctaa 4663900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 10744545 - 10744621
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||  ||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||| | ||||| |||||||    
T  10744545 tttcttcaccttcatccaccaaagatgggtgatttagggtcaacttttgacccaaaatcactcctctaacttgtttt 10744621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 32457616 - 32457680
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||| ||| ||| |||||||||||||||||||| ||||| ||||||| ||||||||||| |||||    
T  32457616 ttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcacccatctaa 32457680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 34020584 - 34020630
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||||||| ||| || ||||||||||| |||||||||||||||    
T  34020584 tttcttcttcttcatctaccaaagaggggtggtttagggtcaatttt 34020630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 15175765 - 15175830
Alignment:
Q  60 aacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcaccc 125  Q
    |||||||||||| ||||||| | |||| | | |||||||  ||||||||||||| |||||||||||    
T  15175765 aacttttcttctacttgatctattaaaaaagagtgattttcggtcaattttgacccaaaatcaccc 15175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 19759777 - 19759822
Alignment:
Q  87 gaggggtgatttagggtcaa-ttttgactcaaaatcacccttctaa 131  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 19759822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 31804242 - 31804283
Alignment:
Q  68 ttcttcttgatccactaaagaggggtgatttagggtcaattt 109  Q
    |||| ||| ||||||||||||||||||||||||| |||||||    
T  31804242 ttctcctttatccactaaagaggggtgatttaggatcaattt 31804283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 35038552 - 35038622
Alignment:
Q  49 ctagtcgtcgcaacttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcac 123  Q
    ||||||||| ||||||||||| |||||| || || ||||||||||||||    |||||||||||||  |||||||    
T  35038552 ctagtcgtcacaacttttctttttcttgttctacaaaagaggggtgatt----gtcaattttgacttgaaatcac 35038622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 244600 - 244646
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaatttt 110  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||    
T  244600 tttcttcttcttcatccacaaaagagggttgatttagggtcaatttt 244646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 9796 - 9736
Alignment:
Q  64 tttcttcttcttgatccactaaagaggggtgatttagggtcaa-ttttgactcaaaatcac 123  Q
    |||||||| ||| |||||| |||||||| |||||||||||||| ||||||| |||||||||    
T  9796 tttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcac 9736  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 15845 - 15767
Alignment:
Q  61 acttttcttcttcttgatccactaaagaggggtgatttagggtcaattttgactcaaaatcacccttctaaattgtttt 139  Q
    |||||||||||| |||||  |  |||||||| ||||||  ||||||||||||||  ||||||||  |||||||||||||    
T  15845 acttttcttctttttgatttataaaagagggttgatttttggtcaattttgacttgaaatcaccaatctaaattgtttt 15767  T

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Target: scaffold0312 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 6115 - 6148
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  6115 agaggggtgatttagggtcaattttgacccaaaa 6148  T

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Target: scaffold0536 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 2878 - 2918
Alignment:
Q  86 agaggggtgatttagggtcaattttgactcaa-aatcaccc 125  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  2878 agaggggtgatttagggtcaattttgacccaataatcaccc 2918  T

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