View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_217 (Length: 266)

Name: NF6867A_low_217
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_217
NF6867A_low_217
[»] chr2 (2 HSPs)
chr2 (21-266)||(27162290-27162535)
chr2 (109-266)||(22911124-22911281)
[»] chr1 (2 HSPs)
chr1 (13-266)||(1977046-1977299)
chr1 (13-266)||(1984412-1984665)
[»] chr5 (1 HSPs)
chr5 (13-266)||(20955653-20955906)
[»] scaffold0764 (1 HSPs)
scaffold0764 (12-266)||(3160-3414)
[»] scaffold0313 (2 HSPs)
scaffold0313 (12-266)||(3201-3455)
scaffold0313 (12-266)||(17358-17612)
[»] scaffold1531 (1 HSPs)
scaffold1531 (12-266)||(966-1220)
[»] scaffold0059 (1 HSPs)
scaffold0059 (49-254)||(42955-43159)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 27162290 - 27162535
Alignment:
Q  21 atcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaatgcttgaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27162290 atcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaatgcttgaa 27162389  T
Q  121 agattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagaggacacaggag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  27162390 agattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtttgagaagacacaggag 27162489  T
Q  221 taggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  27162490 taggcatgctggaggtggttatgtggagttgagctagagtttttga 27162535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 22911124 - 22911281
Alignment:
Q  109 tgaatgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgag 208  Q
    ||||||||||| || ||||||||||| || || || ||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||||||||| |    
T  22911124 tgaatgcttgataggttcctgactttctctagtttcctcttcttacttgtcttcttaacattctgagctaagtgtctcttgacatagctagttgtttgtg 22911223  T
Q  209 aggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  22911224 aggacacaggagtaggcatgttggaggtggttatgtgaagttgagcaagggtttttga 22911281  T

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Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 1977046 - 1977299
Alignment:
Q  13 agattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaa 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1977046 agatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaa 1977145  T
Q  113 tgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagga 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1977146 tgcttgaaagatttctgactttttcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtttgagagga 1977245  T
Q  213 cacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1977246 cacaggagtaggcatgttggaggtggttatgtgaagttgagctagagtttttga 1977299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 1984412 - 1984665
Alignment:
Q  13 agattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaa 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1984412 agatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaa 1984511  T
Q  113 tgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagga 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1984512 tgcttgaaagatttctgactttttcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtttgagagga 1984611  T
Q  213 cacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1984612 cacaggagtaggcatgttggaggtggttatgtgaagttgagctagagtttttga 1984665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 20955906 - 20955653
Alignment:
Q  13 agattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaa 112  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20955906 agatttacatcagaggattcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcagaagagttttcttcctcttgtctttgaa 20955807  T
Q  113 tgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagga 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  20955806 tgcttgaaagattcctgactttctcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtttgagaaga 20955707  T
Q  213 cacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20955706 cacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 20955653  T

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Target: scaffold0764 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 3160 - 3414
Alignment:
Q  12 gagattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttga 111  Q
    |||||||||| ||| ||||||| | |||||||||||||||||||| || || ||||||||  | ||||| ||||||||||||||||| |||||||| |||    
T  3160 gagattaacagcagtgggttcatcctcctttggtggggaatcagctatctcttcatcagatgcctctttgtcaggagagttttcttcttcttgtctctga 3259  T
Q  112 atgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagg 211  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || || |    
T  3260 atgcttgaaagatttctgactttttcaagcttcctcttcttacttggcttcttaacattctgagctgagtgtcttttgacagagctggttgtctgtgaag 3359  T
Q  212 acacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  3360 acactggagtaggcatgttggaggtggttatgtgaagttgagctagggtctttga 3414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 3455 - 3201
Alignment:
Q  12 gagattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttga 111  Q
    |||||||||| ||| ||||||| | |||||||||||||||||||| || || ||||||||  | ||||| ||||||||||||||||| |||||||| |||    
T  3455 gagattaacagcagtgggttcatcctcctttggtggggaatcagctatctcttcatcagatgcctctttgtcaggagagttttcttcttcttgtctctga 3356  T
Q  112 atgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagg 211  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || || |    
T  3355 atgcttgaaagatttctgactttttcaagcttcctcttcttacttggcttcttaacattctgagctgagtgtcttttgacagagctggttgtctgtgaag 3256  T
Q  212 acacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  3255 acactggagtaggcatgttggaggtggttatgtgaagttgagctagggtctttga 3201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 17612 - 17358
Alignment:
Q  12 gagattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttga 111  Q
    |||||||||| ||| ||||||| | |||||||||||||||||||| || || ||||||||  | ||||| ||||||||||||||||| |||||||| |||    
T  17612 gagattaacagcagtgggttcatcctcctttggtggggaatcagctatctcttcatcagatgcctctttgtcaggagagttttcttcttcttgtctctga 17513  T
Q  112 atgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagg 211  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || || |    
T  17512 atgcttgaaagatttctgactttttcaagcttcctcttcttacttggcttcttaacattctgagctgagtgtcttttgacagagctggttgtctgtgaag 17413  T
Q  212 acacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  17412 acactggagtaggcatgttggaggtggttatgtgaagttgagctagggtctttga 17358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1531 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold1531
Description:

Target: scaffold1531; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 1220 - 966
Alignment:
Q  12 gagattaacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttga 111  Q
    |||||||||| ||| |||||||||||||||| |||| || |||||||| ||||||| |||  |||||||||  |||||||| |  || |  | ||| |||    
T  1220 gagattaacagcagtgggttcaccatcctttagtggagagtcagccatctcatcattagatgcttctttttagggagagttcttctctttatctctctga 1121  T
Q  112 atgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagagg 211  Q
    | |||||| |  ||||||||||| ||||| || ||||||||| ||| |||||| ||||||||| || ||||||| |||| |||||||||||||||||| |    
T  1120 acgcttgataagttcctgactttctcaagtttcctcttcttatttgacttcttgacattctgagctgagtgtctcttgaaagagctagttgtttgagaag 1021  T
Q  212 acacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga 266  Q
    ||||||| |||||||||||||||||||||||||  |||||||| ||||| |||||    
T  1020 acacaggggtaggcatgttggaggtggttatgttaagttgagcgagagtctttga 966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 42955 - 43159
Alignment:
Q  49 gaatcagccatttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgactttttcaagctttctct 148  Q
    ||||||||||| |||||||||||  |||||||||||||||| |  | | | ||   | | ||||||||||||| ||| ||||||||| |||  || || |    
T  42955 gaatcagccatatcatcatcagagacttctttttcaggagattcatttacttcagctatatgaatgcttgaaa-atttctgacttttccaattttccttt 43053  T
Q  149 tcttacttggcttcttaacattctgaactaagtgtcttttgacagagctagttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggag 248  Q
    |||| ||| |||||||| | |||||  || ||||||| |||| ||||| ||||| ||   |||| ||| ||||||||||||||| |||||||||||| ||    
T  43054 tcttccttagcttcttatccttctgttctgagtgtctcttgatagagccagttgcttctcaggatacatgagtaggcatgttggtggtggttatgtgaag 43153  T
Q  249 ttgagc 254  Q
    ||||||    
T  43154 ttgagc 43159  T

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