View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_218 (Length: 265)
Name: NF6867A_low_218
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_218 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 55 - 247
Target Start/End: Original strand, 35406960 - 35407152
Alignment:
| Q |
55 |
aaggagtgagtcttgatagtgaaactcttttaaatacatgcaagttttagatttaagaaattctctgtttgagactctactttattgatcaattgctaaa |
154 |
Q |
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| T |
35406960 |
aaggagtgagtcttgatagtgaaacttttttaaatacatgcaagttttagatttaagaaattctatgtttgagactctacttaattgatcaattgctaaa |
35407059 |
T |
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| Q |
155 |
ttagaatacttatgtgcaagnnnnnnnactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagcctt |
247 |
Q |
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| T |
35407060 |
ttagaatacttatgtggaagtttgtttactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagcctt |
35407152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 35406880 - 35406935
Alignment:
| Q |
7 |
atcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
62 |
Q |
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| T |
35406880 |
atcaattgttgaaaatgtttcaatttcccattctttgttccccaagtcaaggagtg |
35406935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 18117257 - 18117202
Alignment:
| Q |
7 |
atcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
62 |
Q |
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| T |
18117257 |
atcaattgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtg |
18117202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 18132985 - 18132941
Alignment:
| Q |
207 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttcgag |
251 |
Q |
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| T |
18132985 |
ttgaaacactgcctaaagggttaggcaagctgatcagccttcgag |
18132941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 18116943 - 18116902
Alignment:
| Q |
207 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttc |
248 |
Q |
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| T |
18116943 |
ttgaaacattgcctaaagggttaggcaagctgatcagccttc |
18116902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 18124910 - 18124860
Alignment:
| Q |
7 |
atcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaag |
57 |
Q |
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| T |
18124910 |
atcaattgttgaaaatgattcacttggccatactttattccccaagtcaag |
18124860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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