View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_220 (Length: 264)
Name: NF6867A_low_220
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_220 |
 | |
|
| [»] scaffold0245 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 1313676 - 1313426
Alignment:
| Q |
9 |
tggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1313676 |
tggtgttgttttaagcattgatgctaacatgatttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggtt |
1313577 |
T |
|
| Q |
109 |
gaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1313576 |
gaaaaagaaggaggtaaactcttgccaggttgatctggagaagcagctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgatg |
1313477 |
T |
|
| Q |
209 |
gttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1313476 |
gttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
1313426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 1294665 - 1294415
Alignment:
| Q |
9 |
tggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggtt |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1294665 |
tggtgttgttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtc |
1294566 |
T |
|
| Q |
109 |
gaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1294565 |
gaaaaagaaggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgatg |
1294466 |
T |
|
| Q |
209 |
gttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1294465 |
gttgtggagtctgttacgaaggcgaaggttattcagagataccttggtgat |
1294415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 22575 - 22325
Alignment:
| Q |
9 |
tggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggtt |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22575 |
tggtgttgttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtc |
22476 |
T |
|
| Q |
109 |
gaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22475 |
gaaaaagaaggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgatg |
22376 |
T |
|
| Q |
209 |
gttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22375 |
gttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
22325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27946993 - 27946936
Alignment:
| Q |
163 |
atttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtct |
220 |
Q |
| |
|
||||||||||||| || | |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
27946993 |
atttacgggaaaatcactttatccaccggtgggaaaatctgtggtggttgtggagtct |
27946936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University