View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_222 (Length: 263)
Name: NF6867A_low_222
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_222 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 76 - 257
Target Start/End: Complemental strand, 31282163 - 31281983
Alignment:
| Q |
76 |
aaaaactccaatcactactttcactctcaattttcggccaccatgagactctttttgagaaacaaaaagtgacaatattctatttcatgatgacctctac |
175 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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| T |
31282163 |
aaaaactccaatcaccactttcactctcaattttcggccaccatgagactctttttgagaaataaaa-gtgacaatattctttttcatgatgacctctac |
31282065 |
T |
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| Q |
176 |
caaacccctcaatttatttcatgatatgggaactttcaccggagaccaccgtgccggaagctgctgcagccgtgccggaaaa |
257 |
Q |
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| T |
31282064 |
caaacctctcaatttatttcatgatctgggtactttcaccggagaccaccgtgccggaagctgctgcagccgcgccggaaaa |
31281983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 55424555 - 55424735
Alignment:
| Q |
76 |
aaaaactccaatcactactttcactctcaattttcggccaccatgagactctttttgagaaacaaaaagtgacaatattctatttcatgatgacctctac |
175 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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| T |
55424555 |
aaaaactccaatcaccactttcactctcaattttcggccaccatgagactctttttgagaaataaaa-gtgacaatattctttttcatgatgacctctac |
55424653 |
T |
|
| Q |
176 |
caaacccctcaatttatttcatgatatgggaactttcaccggagaccaccgtgccggaagctgctgcagccgtgccggaaaa |
257 |
Q |
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|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55424654 |
caaacctctcaatttatttcatgatctgggtactttcaccggagaccaccgtgccggaagctgctgcagccgcgccggaaaa |
55424735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 37415943 - 37415831
Alignment:
| Q |
83 |
ccaatcactactttcactctcaattttcggccaccatgagactctttttgagaaacaaaaagtgacaatattctatttcatgatgacctctaccaaaccc |
182 |
Q |
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|||||||| |||||| |||| ||||| ||||||| |||| |||||||||||||||| |||| ||||||| || | |||||| |||||||| ||| || |
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| T |
37415943 |
ccaatcaccactttctctctaaattt-cggccactatgaaactctttttgagaaacgaaaa-tgacaatcttgttccccatgataacctctacaaaagcc |
37415846 |
T |
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| Q |
183 |
ctcaatttatttcat |
197 |
Q |
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|| ||||||||||| |
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| T |
37415845 |
ctatatttatttcat |
37415831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 76 - 257
Target Start/End: Complemental strand, 28656743 - 28656563
Alignment:
| Q |
76 |
aaaaactccaatcactactttcactctcaattttcggccaccatgagactctttttgagaaacaaaaagtgacaatattctatttcatgatgacctctac |
175 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
28656743 |
aaaaactccaatcaccactttcactctcaattttcggccaccatgagactctttttgagaaacaaaa-gtgacaatattctttttcatgatgacctctac |
28656645 |
T |
|
| Q |
176 |
caaacccctcaatttatttcatgatatgggaactttcaccggagaccaccgtgccggaagctgctgcagccgtgccggaaaa |
257 |
Q |
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|||||| |||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
28656644 |
caaacctctcaatttatttcatgatctgggtactttcaccggagaccaccatgccggaagttgctgcagccgcgccggaaaa |
28656563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 1310146 - 1310110
Alignment:
| Q |
107 |
tttcggccaccatgagactctttttgagaaacaaaaa |
143 |
Q |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
1310146 |
tttcggccaccatgaaactctttttgagaaacgaaaa |
1310110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 7305448 - 7305484
Alignment:
| Q |
107 |
tttcggccaccatgagactctttttgagaaacaaaaa |
143 |
Q |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
7305448 |
tttcggccaccatgaaactctttttgagaaacgaaaa |
7305484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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