View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_223 (Length: 263)
Name: NF6867A_low_223
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_223 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 9443549 - 9443303
Alignment:
| Q |
11 |
aatataatttgaatgaattggttataaaaaattaatcatggctacatcagtgtttgttcgtatgtttcccaactctctgatttccggcttcgcaaaaatc |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443549 |
aatatagtttgaatgaattggttataaaaacttaatcatggctacatcagtgtttgttcgtatgtttcccaactctctgatttccggcttcgcaaaaatc |
9443450 |
T |
|
| Q |
111 |
atggtagtataccaggtcaacaaacatgcgctaaaactaaacgataaatttaagaataaaaatcaatggaagagacaaaaactataagttctagtttcga |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9443449 |
atggtagtataccaggtttacaaacatgcgctaaaactaaaccataaatttaagaataaaaatcaatggtagagacaaaaactataagttctagtttcga |
9443350 |
T |
|
| Q |
211 |
gttagaatcaactttggatgcaattttccataaaatcacatatctta |
257 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9443349 |
gttagaatcaactttggaagcaattttccataaaatcacatatctta |
9443303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University