View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_224 (Length: 262)
Name: NF6867A_low_224
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_224 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 42444509 - 42444248
Alignment:
| Q |
1 |
taccctctggcttattcacatggaaaatgtatatttttgaagtgcttgtctcagtactccgagcggtagggtgcagttcacttccttgagtaaaatgaat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444509 |
taccctctggcttattcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagggtgcagttcacttccttgagtaaaatgaat |
42444410 |
T |
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| Q |
101 |
atggaaactcaacacgaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttctgcttgatggaagaatgaaagaggtgtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42444409 |
atggaaactcaacacgaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttctgcttgatggaagaatgaaagaagtgtgct |
42444310 |
T |
|
| Q |
201 |
cta----aatacattcacaatgattatatatttatatgtaactttgtaagtaacactttttg |
258 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444309 |
ctaaataaatacattcacaatgattatatatttatatgtaactttgtaagtaacactttttg |
42444248 |
T |
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