View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_229 (Length: 259)
Name: NF6867A_low_229
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_229 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 28399 - 28628
Alignment:
| Q |
11 |
cacagaacaaaaaacacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28399 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
28484 |
T |
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| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcacgtagttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28485 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
28584 |
T |
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| Q |
211 |
cttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585 |
cttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
28628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 275509 - 275738
Alignment:
| Q |
11 |
cacagaacaaaaaacacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
275509 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
275594 |
T |
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| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcacgtagttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
275595 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
275694 |
T |
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| Q |
211 |
cttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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| T |
275695 |
cttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
275738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 26396113 - 26396343
Alignment:
| Q |
11 |
cacagaacaaaaaacacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26396113 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
26396198 |
T |
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| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc-ttttcggtgccccttttgtttttgaatcttgaggatcacgtagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26396199 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtt |
26396298 |
T |
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| Q |
210 |
tcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396299 |
tcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
26396343 |
T |
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