View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_243 (Length: 254)

Name: NF6867A_low_243
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_243
NF6867A_low_243
[»] chr1 (15 HSPs)
chr1 (1-149)||(24883199-24883347)
chr1 (80-149)||(27171800-27171869)
chr1 (79-149)||(3385308-3385378)
chr1 (79-148)||(3385543-3385612)
chr1 (81-148)||(34969987-34970054)
chr1 (79-149)||(24882971-24883041)
chr1 (79-149)||(34622556-34622626)
chr1 (79-148)||(49776819-49776888)
chr1 (95-149)||(33156685-33156739)
chr1 (81-149)||(33400857-33400925)
chr1 (78-144)||(33156455-33156520)
chr1 (82-148)||(39781073-39781139)
chr1 (80-149)||(33401087-33401156)
chr1 (104-149)||(38338898-38338943)
chr1 (117-149)||(13946960-13946992)
[»] chr7 (10 HSPs)
chr7 (77-149)||(35207176-35207248)
chr7 (79-147)||(19318147-19318215)
chr7 (75-147)||(25048257-25048329)
chr7 (79-149)||(35207406-35207476)
chr7 (79-147)||(19318452-19318520)
chr7 (79-149)||(19318379-19318449)
chr7 (78-147)||(39983870-39983939)
chr7 (84-149)||(6408485-6408551)
chr7 (80-141)||(3740644-3740705)
chr7 (80-116)||(2830833-2830869)
[»] chr2 (14 HSPs)
chr2 (77-149)||(4371452-4371524)
chr2 (79-149)||(22563210-22563280)
chr2 (79-147)||(29893030-29893098)
chr2 (79-149)||(17200078-17200148)
chr2 (79-149)||(34645547-34645617)
chr2 (78-149)||(34645777-34645848)
chr2 (95-149)||(12232579-12232633)
chr2 (79-149)||(21265563-21265633)
chr2 (79-149)||(22563441-22563511)
chr2 (104-149)||(17200309-17200354)
chr2 (80-148)||(4682757-4682825)
chr2 (79-149)||(20296647-20296717)
chr2 (79-149)||(21265793-21265863)
chr2 (104-144)||(156973-157013)
[»] chr3 (14 HSPs)
chr3 (77-148)||(38500053-38500124)
chr3 (79-149)||(8799317-8799387)
chr3 (79-149)||(38499819-38499889)
chr3 (80-149)||(4041414-4041483)
chr3 (84-149)||(53197214-53197279)
chr3 (74-149)||(43797347-43797422)
chr3 (107-149)||(8657427-8657469)
chr3 (117-147)||(4041220-4041250)
chr3 (85-147)||(25349943-25350005)
chr3 (107-149)||(46883643-46883685)
chr3 (86-147)||(43797585-43797646)
chr3 (80-149)||(43797872-43797941)
chr3 (116-149)||(46883452-46883485)
chr3 (77-149)||(48346210-48346282)
[»] chr8 (14 HSPs)
chr8 (79-149)||(6911029-6911099)
chr8 (79-149)||(15009089-15009159)
chr8 (78-149)||(14999170-14999241)
chr8 (79-149)||(8489373-8489443)
chr8 (79-149)||(43801470-43801540)
chr8 (79-149)||(43801702-43801772)
chr8 (78-146)||(41722061-41722129)
chr8 (80-147)||(41403760-41403827)
chr8 (78-147)||(41403993-41404062)
chr8 (79-147)||(16324844-16324912)
chr8 (79-146)||(16325080-16325147)
chr8 (112-149)||(6911260-6911297)
chr8 (77-149)||(9133898-9133971)
chr8 (112-148)||(40621759-40621795)
[»] chr4 (14 HSPs)
chr4 (79-149)||(54316060-54316130)
chr4 (79-149)||(7061972-7062042)
chr4 (77-149)||(4402032-4402105)
chr4 (82-149)||(23655299-23655366)
chr4 (107-149)||(5466080-5466122)
chr4 (79-149)||(50544256-50544326)
chr4 (81-149)||(5465855-5465923)
chr4 (77-149)||(32591159-32591231)
chr4 (85-149)||(50551483-50551547)
chr4 (78-149)||(9551456-9551527)
chr4 (79-149)||(11789859-11789929)
chr4 (79-149)||(17914979-17915049)
chr4 (84-146)||(46993072-46993134)
chr4 (95-148)||(32591381-32591434)
[»] chr5 (8 HSPs)
chr5 (76-149)||(14076900-14076973)
chr5 (79-149)||(31193965-31194035)
chr5 (79-149)||(31194196-31194266)
chr5 (79-149)||(17370067-17370137)
chr5 (78-147)||(36955302-36955371)
chr5 (95-149)||(36955525-36955579)
chr5 (95-147)||(32347130-32347182)
chr5 (79-149)||(8754658-8754728)
[»] chr6 (3 HSPs)
chr6 (78-149)||(22748587-22748658)
chr6 (79-149)||(16125522-16125592)
chr6 (78-148)||(22748820-22748890)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 24883347 - 24883199
Alignment:
Q  1 aatgtctggagtattttgtgtatgattgtgtggagtctttggaaaattcgtaacttaaattttttggatgagataatggagttcgggtatgtttcattta 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24883347 aatgtctcgagtattttgtgtatgattgtgtggagtctttggaaaagtcgtaacttaaattttttggatgagataatggagttcgggtatgttccattta 24883248  T
Q  101 ggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    || ||||||| ||||||||||||||||||||| ||| |||| |||||||    
T  24883247 ggctaagctccatttactccatttagggtttggatgcaagatatgtggc 24883199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 27171800 - 27171869
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||||| |||||||||| ||||||  |||||||||||||| |||||| ||||||||||||||||    
T  27171800 agttcgggtatgcttcatttaggctaagcttcatttactccatttatggtttggatgtaagacatgtggc 27171869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 3385308 - 3385378
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| |||||||||| ||||||   ||||| |||||||||||||| ||||||||||||||||    
T  3385308 gagttcgggtatgcttcatttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgtggc 3385378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 3385612 - 3385543
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    ||||||||||||| | ||||||||  |||||| ||||||||||||||||||||| |||||||| ||||||    
T  3385612 gagttcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgtgg 3385543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 34969987 - 34970054
Alignment:
Q  81 gttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    ||||||||||| |||||||||||||| ||| |||||||| ||||||| |||| ||| |||||||||||    
T  34969987 gttcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgtgg 34970054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 24882971 - 24883041
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||| ||| ||||||||||||||||||||| ||| |||||| |||||    
T  24882971 gagttcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagacacgtggc 24883041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 34622626 - 34622556
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||  ||||||| | |||||||||||| |||||||||| ||||||||||||    
T  34622626 gagttcgggtatgctccatttagactaagctccagttactccatttaaggtttgaatgcaagacatgtggc 34622556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 49776819 - 49776888
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    ||||||||||||| | |||||| | |||||| ||||||||||||||||| |||| ||| |||||||||||    
T  49776819 gagttcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgtgg 49776888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 33156739 - 33156685
Alignment:
Q  95 catttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| |||||| |||||||||||||||||||||| ||  ||||||||||||    
T  33156739 catttaggctaagctttatttactccatttagggtttggatacaagacatgtggc 33156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 33400857 - 33400925
Alignment:
Q  81 gttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||| ||| | |||||| | ||||||| |||||||||||||| |||||| ||||||| ||||||||    
T  33400857 gttcgggcatgctccatttaagctaagctccatttactccatttaaggtttggatgtaaggcatgtggc 33400925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 33156455 - 33156520
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacat 144  Q
    |||||||||||||| | |||| ||| || |||| ||||||||||||||| ||||| |||||||||||    
T  33156455 ggagttcgggtatgctccatt-aggctaggctccatttactccatttagagtttggatgtaagacat 33156520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 39781073 - 39781139
Alignment:
Q  82 ttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    |||||||||||||||||||| ||||| |  ||||||| ||||||| ||||| |||  ||||||||||    
T  39781073 ttcgggtatgtttcatttagattaagtttcatttacttcatttagagtttggatgcgagacatgtgg 39781139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 33401156 - 33401087
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||| |||| | |||||||| ||||||| |||||||  ||||| |||||  ||||||||||||||||    
T  33401156 agttcggatatgctacatttaggctaagctcaatttactttatttaaggtttagatgtaagacatgtggc 33401087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 38338943 - 38338898
Alignment:
Q  104 taagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||||    
T  38338943 taagctctatttattccatttgaggtttggatgtaagacatgtggc 38338898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 13946960 - 13946992
Alignment:
Q  117 ctccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||||||||| ||||||||||||||||    
T  13946960 ctccatttagggtttggatgtaagacatgtggc 13946992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 35207176 - 35207248
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||||||| || |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  35207176 tggagttcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggc 35207248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 19318147 - 19318215
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    ||||| ||||||| | |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  19318147 gagtttgggtatgctccatttaggttaagcgccatttactccatttagagtttggatgtaagacatgtg 19318215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 25048329 - 25048257
Alignment:
Q  75 aatggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    ||||||||||||||||| | |||||||| ||||||| ||||||| |||||||| |||| ||| ||||||||||    
T  25048329 aatggagttcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgtg 25048257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 35207476 - 35207406
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| |||| | |||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||    
T  35207476 gagttcggatatgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgtggc 35207406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 19318520 - 19318452
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    ||||||||||||| | |||||||| ||||||| |||||||||||||| |||||  ||| ||||||||||    
T  19318520 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgtg 19318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 19318449 - 19318379
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||||||  |||||||||||||| |||||  ||| ||||||||||||    
T  19318449 gagttcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgtggc 19318379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 39983939 - 39983870
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    |||||||  ||||| | ||||||||  |||||| ||||||||||||||||||||| ||| ||||||||||    
T  39983939 ggagttcatgtatgctccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgtg 39983870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 6408551 - 6408485
Alignment:
Q  84 cgggtatgtttcatttaggttaagct-ctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| | |||||||||||| || || |||||| ||||||||||||| ||| ||||||||||||    
T  6408551 cgggtatgctccatttaggttaaacttctttttacttcatttagggtttggatgcaagacatgtggc 6408485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 3740644 - 3740705
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaaga 141  Q
    |||||||||||| |  ||||||||||| || |||||| |||||||| |||||| ||||||||    
T  3740644 agttcgggtatgctcaatttaggttaaactttatttattccatttaaggtttggatgtaaga 3740705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 2830833 - 2830869
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctattta 116  Q
    |||||||||||| |||||||||||||||||| |||||    
T  2830833 agttcgggtatgcttcatttaggttaagctccattta 2830869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 4371452 - 4371524
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  4371452 tggagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggc 4371524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 22563210 - 22563280
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  22563210 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggc 22563280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 29893098 - 29893030
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    ||||||||||||| | |||||||| |||||||||||||||| |||||||||||| ||| ||||||||||    
T  29893098 gagttcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgtg 29893030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 17200078 - 17200148
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | ||||||||  |||||| |||||||||||||||| |||| ||||||||||||||||    
T  17200078 gagttcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtggc 17200148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 34645547 - 34645617
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| |  |||||||||||| ||||||||||||||||||||| || ||| ||||||||||||    
T  34645547 gagttcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgtggc 34645617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 34645848 - 34645777
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| || |||||||| | | ||| ||||| ||||||||||||||| ||||||||||||||||    
T  34645848 ggagttcgggtatattccatttaggcttaactccatttattccatttagggtttggatgtaagacatgtggc 34645777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 12232579 - 12232633
Alignment:
Q  95 catttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||    
T  12232579 catttaggctaagctccatttactctatttagggtttggatgtaagacatgtggc 12232633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 21265563 - 21265633
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||| ||||||| | |||||||  ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  21265563 gagttagggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggc 21265633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 22563511 - 22563441
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||| ||| |||||||||||||||| |||| ||| ||||||||||||    
T  22563511 gagttcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgtggc 22563441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 17200354 - 17200309
Alignment:
Q  104 taagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||    
T  17200354 taagctccatttactccatttaaggtttggatgtaagacatgtggc 17200309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 4682757 - 4682825
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    |||||||||||||| ||||||  |||||||  ||||||||||||||| ||||  ||| |||||||||||    
T  4682757 agttcgggtatgttccatttaatttaagcttcatttactccatttagagtttagatgcaagacatgtgg 4682825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 20296717 - 20296647
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||| ||||||| |  ||||||| ||||||| |||||||||||||| |  ||| ||||||||||||||||    
T  20296717 gagtttgggtatgctctatttaggctaagctccatttactccatttaagaattggatgtaagacatgtggc 20296647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 21265863 - 21265793
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||| ||||| |  ||||| | ||||||| |||||||| |||||||||||| ||| ||||||||||||    
T  21265863 gagttcgagtatgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgtggc 21265793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 156973 - 157013
Alignment:
Q  104 taagctctatttactccatttagggtttgaatgtaagacat 144  Q
    ||||||| |||||||||||||||| |||| |||||||||||    
T  156973 taagctccatttactccatttaggatttggatgtaagacat 157013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 38500124 - 38500053
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    ||||||||||||||| | |||||||| ||||||| |||||||||| |||||||||| |||||||||||||||    
T  38500124 tggagttcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtgg 38500053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 8799317 - 8799387
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| || |||| ||||||||||||||||||||| ||| ||||||||||||    
T  8799317 gagttcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggc 8799387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 38499819 - 38499889
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  38499819 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtggc 38499889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 4041483 - 4041414
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||||| | |||||||| ||||||  ||||||||||||||||||||| ||| ||||||||||||    
T  4041483 agttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggc 4041414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 53197279 - 53197214
Alignment:
Q  84 cgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| | |||||||| ||||||  ||||||||||||||||||||| ||| ||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggc 53197214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 43797347 - 43797422
Alignment:
Q  74 taatggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||| |  |||| | |||||||| ||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  43797347 taatggagtttgaatatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggc 43797422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 8657427 - 8657469
Alignment:
Q  107 gctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  8657427 gctccatttactccatttagggtttgaatgcaagacatgtggc 8657469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 4041220 - 4041250
Alignment:
Q  117 ctccatttagggtttgaatgtaagacatgtg 147  Q
    |||||||||||||||||||||||||||||||    
T  4041220 ctccatttagggtttgaatgtaagacatgtg 4041250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 25350005 - 25349943
Alignment:
Q  85 gggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    ||||||| | ||||||  |||||||| ||||| || |||||||||||| ||||||||||||||    
T  25350005 gggtatgctccatttaaattaagctccatttattctatttagggtttggatgtaagacatgtg 25349943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 46883685 - 46883643
Alignment:
Q  107 gctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||    
T  46883685 gctccatttactccatttagggtttggatgcaagacatgtggc 46883643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 43797646 - 43797585
Alignment:
Q  86 ggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    |||||| | |||||||| |||| || |||||||| |||||||||||| ||| ||||||||||    
T  43797646 ggtatgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgtg 43797585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 43797941 - 43797872
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||| |||||| |||||||  | ||||  ||||||||||||||||||| ||| ||| ||||||||||||    
T  43797941 agttcaggtatgcttcatttttgctaagtgctatttactccatttagggcttggatgcaagacatgtggc 43797872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 46883452 - 46883485
Alignment:
Q  116 actccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||||||| ||||||||||||||||    
T  46883452 actccatttagggtttggatgtaagacatgtggc 46883485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 48346282 - 48346210
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||||| | |||||||||| || ||||||||||  ||||||  |||| ||| || |||||||||    
T  48346282 tggagttcgggtatgctccatttaggttgagttctatttactttatttagaatttggatgcaaaacatgtggc 48346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 6911029 - 6911099
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||| |||||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6911029 gagttcaggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtggc 6911099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 15009159 - 15009089
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  15009159 gagttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgtggc 15009089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 14999170 - 14999241
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||| |||| | |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  14999170 ggagttcggatatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtggc 14999241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 8489373 - 8489443
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||| ||||||| | |||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||    
T  8489373 gagtttgggtatgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgtggc 8489443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 43801470 - 43801540
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| |||||||||| ||| ||  ||||||||||||||| ||||| ||||||||||||||||    
T  43801470 gagttcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgtggc 43801540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 43801772 - 43801702
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| ||| |||| |||||||    
T  43801772 gagttcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgtggc 43801702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 41722129 - 41722061
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgt 146  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||| | ||| ||| |||||||||    
T  41722129 ggagttcgggtatgtttcatttaggctaagctctatttactttatttagagcttggatgcaagacatgt 41722061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 41403760 - 41403827
Alignment:
Q  80 agttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||| |||  |||||||| |||||    
T  41403760 agttcgggtatgcttcatttagattaagctcaatttactccatttaggattttgatgtaagatatgtg 41403827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 41404062 - 41403993
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    |||||| ||||||| | ||||||||||||| || |||||||| |||||||||||| ||| ||||||||||    
T  41404062 ggagtttgggtatgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgtg 41403993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 16324844 - 16324912
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    ||||||||| ||| | |||||||| ||||||| ||||| ||||||||||||||| ||| ||||||||||    
T  16324844 gagttcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgtg 16324912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 16325147 - 16325080
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgt 146  Q
    ||||||| ||||| |||||||| |  || ||| ||||||||||||||||||||| ||| |||||||||    
T  16325147 gagttcgagtatgcttcatttaagccaaactccatttactccatttagggtttggatgcaagacatgt 16325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 6911297 - 6911260
Alignment:
Q  112 atttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgtggc 6911260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 9133898 - 9133971
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttaggg-tttgaatgtaagacatgtggc 149  Q
    ||||||| ||||||| |  |||||||| |||||| ||||||||||||||||| |||| ||| | ||||||||||    
T  9133898 tggagtttgggtatgctctatttaggtaaagctcaatttactccatttagggatttggatgcatgacatgtggc 9133971  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 40621795 - 40621759
Alignment:
Q  112 atttactccatttagggtttgaatgtaagacatgtgg 148  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  40621795 atttacttcatttagggtttgaatgtaaaacatgtgg 40621759  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 54316130 - 54316060
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||| |||||||| | |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  54316130 gagtccgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtggc 54316060  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 7061972 - 7062042
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||||    
T  7061972 gagttcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgtggc 7062042  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 4402032 - 4402105
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttagg-gtttgaatgtaagacatgtggc 149  Q
    ||||||||  ||||| ||||||||||| | |||||||||| |||||||||| ||||| ||||||||||||||||    
T  4402032 tggagttcatgtatgcttcatttaggtaatgctctatttaatccatttaggagtttggatgtaagacatgtggc 4402105  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 23655366 - 23655299
Alignment:
Q  82 ttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||| | |||||||||||||||  ||||| ||||||||||||||  ||| ||||||||||||    
T  23655366 ttcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgtggc 23655299  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 5466122 - 5466080
Alignment:
Q  107 gctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  5466122 gctctatttactctatttagggtttggatgtaagacatgtggc 5466080  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 50544256 - 50544326
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| |||| | |||||||| ||||||| ||||| || |||||||||||| ||| ||||||||||||    
T  50544256 gagttcggatatgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgtggc 50544326  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 5465855 - 5465923
Alignment:
Q  81 gttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||| | |||||||| |||| |  ||||||| ||||||||||||  ||||||||||||||||    
T  5465855 gttcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgtggc 5465923  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 32591159 - 32591231
Alignment:
Q  77 tggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||| ||||||||| |  ||||||||||||||| |||||||||||||| |||||| ||| || | |||||||    
T  32591159 tggagatcgggtatgctctatttaggttaagctccatttactccatttaaggtttgtatgcaaaatatgtggc 32591231  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 50551547 - 50551483
Alignment:
Q  85 gggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||| | |||||||| ||| || ||||||||||||||| |||||| |||||||| |||||||    
T  50551547 gggtatgctccatttaggctaaactttatttactccatttaaggtttggatgtaagatatgtggc 50551483  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 9551527 - 9551456
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||||||| | |||||||  ||| ||| ||||||||||||||||| ||| ||| ||||||| ||||    
T  9551527 ggagttcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacatttggc 9551456  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 11789859 - 11789929
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | ||||||||  |||||  ||||||||||||||||||||  ||| |||| |||||||    
T  11789859 gagttcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgtggc 11789929  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 17915049 - 17914979
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| |||| | |||||||| |||| || ||||||||||||||  ||||| ||| ||||||||||||    
T  17915049 gagttcggatatgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgtggc 17914979  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 46993072 - 46993134
Alignment:
Q  84 cgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgt 146  Q
    |||||||| | |||||||||||||||| ||||| || |||||||||||| ||| |||| ||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgt 46993134  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 32591434 - 32591381
Alignment:
Q  95 catttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    |||||| |||||| | ||||||||| ||||||| |||| |||||||||||||||    
T  32591434 catttaagttaagttttatttactcaatttaggatttggatgtaagacatgtgg 32591381  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 14076973 - 14076900
Alignment:
Q  76 atggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||| |||| | |||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||    
T  14076973 atggagttcggatatgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgtggc 14076900  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 31193965 - 31194035
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  31193965 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggc 31194035  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 31194266 - 31194196
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggc 31194196  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 17370067 - 17370137
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||| | ||| ||| ||||||||||||||||||||| ||| ||||||||||||    
T  17370067 gagttcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtggc 17370137  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 36955302 - 36955371
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    |||||||||||| | | |||||||| ||||||  ||||||||||||||||||||| ||| ||||||||||    
T  36955302 ggagttcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtg 36955371  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 36955579 - 36955525
Alignment:
Q  95 catttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||| |||||||||||||||| ||||||||||||  || ||||||||||||    
T  36955579 catttaggctaagctctatttactctatttagggtttggttgcaagacatgtggc 36955525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 32347182 - 32347130
Alignment:
Q  95 catttaggttaagctctatttactccatttagggtttgaatgtaagacatgtg 147  Q
    |||||||| ||||||| | |||||||||||| |||||| ||||||||||||||    
T  32347182 catttaggctaagctccaattactccatttaaggtttggatgtaagacatgtg 32347130  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 8754658 - 8754728
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||  | |||||||  ||| ||| |||||||| |||||||||||| ||| ||||||||||||    
T  8754658 gagttcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgtggc 8754728  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 22748587 - 22748658
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    |||||||||||||| |  ||||||| || |||| |||||||||||||| | |||| ||| ||||||||||||    
T  22748587 ggagttcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgtggc 22748658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 16125522 - 16125592
Alignment:
Q  79 gagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtggc 149  Q
    ||||||||||||| | |||||||| ||| ||  ||||| | ||||||||||||| ||| ||||||||||||    
T  16125522 gagttcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgtggc 16125592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 22748890 - 22748820
Alignment:
Q  78 ggagttcgggtatgtttcatttaggttaagctctatttactccatttagggtttgaatgtaagacatgtgg 148  Q
    ||||||| |||||| | |||||||  |||| || |||||||||||||||| |||| ||| |||||||||||    
T  22748890 ggagttcaggtatgctccatttagactaagatccatttactccatttaggatttggatgaaagacatgtgg 22748820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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