View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_246 (Length: 253)
Name: NF6867A_low_246
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_246 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 12843342 - 12843587
Alignment:
| Q |
8 |
atgtcgaacaatataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaa |
107 |
Q |
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| T |
12843342 |
atgtcaaacaaaataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaa |
12843441 |
T |
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| Q |
108 |
aatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatctt |
207 |
Q |
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| T |
12843442 |
aatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatctt |
12843541 |
T |
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| Q |
208 |
aacggtacctccaagcttgaacgcgaattccgatactaaaagcaca |
253 |
Q |
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| T |
12843542 |
aacggtacctccaagcttgaacgcgaattccgatactaaaagcaca |
12843587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 12862057 - 12861921
Alignment:
| Q |
90 |
taacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
189 |
Q |
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| T |
12862057 |
taacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
12861958 |
T |
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| Q |
190 |
caatgtaaaatcaatcttaacggtacctccaagcttg |
226 |
Q |
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| T |
12861957 |
gaaagtaaaatcgatcttaagggtacctccaagcttg |
12861921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 13125763 - 13125837
Alignment:
| Q |
91 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactata |
165 |
Q |
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| T |
13125763 |
aacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
147 |
agtagacattaacactataatcttgaatcttgattgaaatt |
187 |
Q |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 13125540 - 13125587
Alignment:
| Q |
20 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattcta |
67 |
Q |
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| T |
13125540 |
ataagtgcaatactcaacaacactaaaatcaaacactgtattattcta |
13125587 |
T |
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