View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_247 (Length: 253)

Name: NF6867A_low_247
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_247
NF6867A_low_247
[»] chr3 (3 HSPs)
chr3 (41-229)||(32368337-32368525)
chr3 (20-86)||(32368534-32368601)
chr3 (118-195)||(18645741-18645818)
[»] chr2 (2 HSPs)
chr2 (91-213)||(12370874-12370994)
chr2 (133-213)||(3461271-3461351)
[»] chr4 (2 HSPs)
chr4 (92-206)||(26076445-26076559)
chr4 (118-195)||(5721971-5722048)
[»] chr7 (3 HSPs)
chr7 (83-229)||(5243245-5243395)
chr7 (160-213)||(35898170-35898223)
chr7 (133-212)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (91-164)||(4958422-4958495)
chr1 (118-213)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (160-213)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (160-213)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (100-200)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 32368525 - 32368337
Alignment:
Q  41 tgaagttcggcctgatgtttccagctactaacaagaaaagagaggctaggctagagggatactctgattcagactgatgtggagatagaatggataggag 140  Q
    ||||||| |||  ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  141 aagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtg 229  Q
    ||| |||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||||| || ||||||||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtg 32368337  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 32368601 - 32368534
Alignment:
Q  20 ctgagaaatgtgaaagga-ccttgaagttcggcctgatgtttccagctactaacaagaaaagagaggc 86  Q
    |||||| ||||||||||| || ||||||| | |||||||||||||||||||||||||||| |||||||    
T  32368601 ctgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 18645818 - 18645741
Alignment:
Q  118 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 195  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  18645818 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 18645741  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 12370874 - 12370994
Alignment:
Q  91 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggt 190  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||| |||||| | | ||||||||||||| || |||| || ||||||||||||||    
T  12370874 ctagagggatactctgattcagactggtgtggagatagaatgga--ggaaaagcacctctagctacctattcaagttcaatggtgctgcaatctcatggt 12370971  T
Q  191 gcactaagaaacaaccagtcact 213  Q
    |||| ||||||||||||||||||    
T  12370972 gcacaaagaaacaaccagtcact 12370994  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 3461271 - 3461351
Alignment:
Q  133 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 213  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||    
T  3461271 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcact 3461351  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 26076445 - 26076559
Alignment:
Q  92 tagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtg 191  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||  ||||||||||||||||||||||| || |||| || |||||||||||||||    
T  26076445 tagagggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaagttcaatggtgttgcaatctcatggtg 26076544  T
Q  192 cactaagaaacaacc 206  Q
    ||  |||||||||||    
T  26076545 caaaaagaaacaacc 26076559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 5722048 - 5721971
Alignment:
Q  118 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 195  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  5722048 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 5721971  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 5243245 - 5243395
Alignment:
Q  83 aggctaggctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggcta----cctattcaaattaaatgatgatg 178  Q
    |||||| |||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| ||| ||    | ||||||| || ||||||||||    
T  5243245 aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcacttctggatatatacttattcaagttcaatgatgatg 5243344  T
Q  179 caatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtg 229  Q
    ||||||||||||| |||||||| |||||||||| | || ||||||||||||    
T  5243345 caatctcatggtgtactaagaagcaaccagtcaatgctctatcatcatgtg 5243395  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 35898170 - 35898223
Alignment:
Q  160 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 213  Q
    |||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||    
T  35898170 ttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcact 35898223  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 296559 - 296638
Alignment:
Q  133 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcac 212  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| ||||    
T  296559 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcac 296638  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 4958495 - 4958422
Alignment:
Q  91 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa 164  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | | |||||||||||||    
T  4958495 ctagagggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa 4958422  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 44536594 - 44536499
Alignment:
Q  118 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 213  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| |||||    
T  44536594 tgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcact 44536499  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 48835 - 48888
Alignment:
Q  160 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 213  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48835 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 48888  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 28248673 - 28248726
Alignment:
Q  160 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 213  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  28248673 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 28248726  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 1183007 - 1183107
Alignment:
Q  100 tactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaaga 199  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| | ||||||  | ||||| || ||  ||| |||||| |||||||| || ||||    
T  1183007 tactctgattcagattggtgtgaagatagaagtgataggagaagcacatctggctatgtcttcaagttcaacaatgttgcaatatcatggtgtacaaaga 1183106  T
Q  200 a 200  Q
    |    
T  1183107 a 1183107  T

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