View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_251 (Length: 251)
Name: NF6867A_low_251
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_251 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 7779509 - 7779728
Alignment:
| Q |
4 |
aaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgttctgcccaatgtaatgcccatactaaactatctagaatagtcgggtgttagt |
103 |
Q |
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| T |
7779509 |
aaaacaaataaaggaaaagattgagagtgattgtcgtgctttaattgttctgcccaatgtaatgcccatactaaactatctagaatagtcgggtgttagt |
7779608 |
T |
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| Q |
104 |
cataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcaaggtctcatacatttgatgaaagtcctaacttacga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
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| T |
7779609 |
cataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcacggtctcatacatctgatgaaagtcctaactgacga |
7779708 |
T |
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| Q |
204 |
gtacaaaccataagtcgtat |
223 |
Q |
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|||||||||||||||||||| |
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| T |
7779709 |
gtacaaaccataagtcgtat |
7779728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 3738271 - 3738171
Alignment:
| Q |
89 |
tagtcgggtgttagtcataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcaaggtctcatacatttgatgaa |
188 |
Q |
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| T |
3738271 |
tagtcggatgttagatataagataccagatacattaaaattacaacatgaattttgtctgaatgaattatattagagcacagtcttatacatctgatgaa |
3738172 |
T |
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| Q |
189 |
a |
189 |
Q |
| |
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| T |
3738171 |
a |
3738171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 2978890 - 2978926
Alignment:
| Q |
2 |
gaaaaacaaataaaggaaaagattgagagtgattgca |
38 |
Q |
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| T |
2978890 |
gaaaaacaaataaaagaaaagattgagaatgattgca |
2978926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 33125779 - 33125656
Alignment:
| Q |
106 |
taagagaccggatagattaaaattacaacatgaattttgtttg-aatgaattatattaaagcaaggtctcatacatttgatg-aaagtcctaacttacga |
203 |
Q |
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||||| || ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||| ||| | ||| | |||| | |||| |
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| T |
33125779 |
taagatactggatatattaaaattacaacatgaattttgtctgaaatgaattatattcaagcacagtctcatacatctgaggaaaaatgctaattgacga |
33125680 |
T |
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| Q |
204 |
gtacaaaccataagtcgtatctga |
227 |
Q |
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| T |
33125679 |
gtacaaaccataagccgtatctga |
33125656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 40845 - 40745
Alignment:
| Q |
89 |
tagtcgggtgttagtcataagagaccggatagattaaaattacaacatgaattttgtttgaa-tgaattatattaaagcaaggtctcatacatttgatga |
187 |
Q |
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||||||||||||| ||||||| || ||||| |||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
40845 |
tagtcgggtgttaaacataagatactggatatattaaa-ttacaacatgaattttgtccgaaatgaattatattaaagcacagtctcatacatctgatga |
40747 |
T |
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| Q |
188 |
aa |
189 |
Q |
| |
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|| |
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| T |
40746 |
aa |
40745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13066815 - 13066753
Alignment:
| Q |
1 |
agaaaaacaaataaaggaaaaga-ttgagagtgattgcagtgctttaattgttctgcccaatg |
62 |
Q |
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| T |
13066815 |
agaaaaacaaataaaggaaaagatttaagagtgattgcagggttttaattgtcctgcccaatg |
13066753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 14150435 - 14150395
Alignment:
| Q |
187 |
aaagtcctaacttacgagtacaaaccataagtcgtatctga |
227 |
Q |
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| T |
14150435 |
aaagtactaactgacgagtacaaaccataagttgtatctga |
14150395 |
T |
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