View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_253 (Length: 251)
Name: NF6867A_low_253
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_253 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 7779133 - 7779214
Alignment:
| Q |
3 |
cgagtttggtgttctaaacaagatgaacataaaagtgggagctatgtgttaacacaattaaaagtgaggatagaaggacgtg |
84 |
Q |
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| T |
7779133 |
cgagttttatgttctaaacaagatgaacatagaagcgggagctatttgttaacacaattaaaagtgaggatagaaggacgtg |
7779214 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 7779307 - 7779369
Alignment:
| Q |
178 |
cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatca |
240 |
Q |
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| T |
7779307 |
cttacctaacctagcctaattattgacaaaataaattctattgattaccttgtcgaaatatca |
7779369 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 25664714 - 25664776
Alignment:
| Q |
178 |
cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatca |
240 |
Q |
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| T |
25664714 |
cttacctaacctaagctaattattcacaaaataaattctaccgattaccttgtcgaaatatca |
25664776 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 13581725 - 13581773
Alignment:
| Q |
192 |
cctaattattgacaaaataaactctattgattactttgtcgaaatatca |
240 |
Q |
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| T |
13581725 |
cctaattattcacaaaataaattctattgattaacttttcgaaatatca |
13581773 |
T |
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