View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_254 (Length: 251)
Name: NF6867A_low_254
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_254 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 29776282 - 29776477
Alignment:
| Q |
19 |
actaaacagtgaacaagactaacacattcataaattagctaaaacattcatacaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgc |
118 |
Q |
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| T |
29776282 |
actaaacagtgaacaagactaacacattcataaattagctaaaacattcatacaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgc |
29776381 |
T |
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| Q |
119 |
cctcatccaacaacttcttcaacaccaagccaatctgcaaacaagagaagaaatcaatgaatcatttccttcacatattatatgcattaacattaa |
214 |
Q |
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| T |
29776382 |
cctcatcgaacaacttcttcaacaccaagccaatctgcaaacaagagaagaaatcaatgaatcatttccttcacatattatatgcattaacattaa |
29776477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 29786681 - 29786751
Alignment:
| Q |
70 |
acaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgccctcatccaacaacttcttcaa |
140 |
Q |
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| T |
29786681 |
acaaaccagagtttagaggtaatccacaaatcttcacgtttcactacgccttcggcaaacaatttcttcaa |
29786751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 29005863 - 29005829
Alignment:
| Q |
211 |
ttaaaatagaaatggtaggccaatattcaaaatag |
245 |
Q |
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| T |
29005863 |
ttaaaatagaaatggtaggccaatattcaaaatag |
29005829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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