View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_255 (Length: 251)
Name: NF6867A_low_255
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_255 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 2787258 - 2787435
Alignment:
| Q |
67 |
taggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaatggaaaactctccataactt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2787258 |
taggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaatggaaaactctccataactt |
2787357 |
T |
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| Q |
167 |
gatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaagcgatcgccacaaacacca |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2787358 |
gatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaagcgatcgccacaaacacca |
2787435 |
T |
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Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 244
Target Start/End: Complemental strand, 19578336 - 19578159
Alignment:
| Q |
67 |
taggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaatggaaaactctccataactt |
166 |
Q |
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|||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
19578336 |
taggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaaaggaaaactctccataactt |
19578237 |
T |
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| Q |
167 |
gatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaagcgatcgccacaaacacca |
244 |
Q |
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||||||| || |||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
19578236 |
gatccatctctttttcatgtccaggaaataaacaattagtaaccctataatccgaaaaagcgatagccacaaacacca |
19578159 |
T |
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