View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_256 (Length: 251)
Name: NF6867A_low_256
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_256 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 20816540 - 20816300
Alignment:
| Q |
1 |
ataaaccgtctgcttagccaatccagggtcaacaacagagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttcctt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20816540 |
ataaaccttctgcttagccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttcctt |
20816441 |
T |
|
| Q |
101 |
ccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20816440 |
ccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacag |
20816341 |
T |
|
| Q |
201 |
ggcccaccgtgtccccccgaattgaaacttcattggatatt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20816340 |
ggcccaccgtgtccccccgaattgcaacttcattggatatt |
20816300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 38779613 - 38779821
Alignment:
| Q |
9 |
tctgcttagccaatccagggtcaacaacagagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaag |
108 |
Q |
| |
|
|||||||||| |||||||| |||| |||| ||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
38779613 |
tctgcttagcaaatccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggg |
38779712 |
T |
|
| Q |
109 |
gcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| |
|
|
| T |
38779713 |
gcctccctccttaactggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacc |
38779812 |
T |
|
| Q |
209 |
gtgtccccc |
217 |
Q |
| |
|
||||||| |
|
|
| T |
38779813 |
tggtccccc |
38779821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33388564 - 33388771
Alignment:
| Q |
1 |
ataaaccgtctgcttagccaatccagggtcaacaacagagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttcctt |
100 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| |||| | ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
33388564 |
ataaaccttctgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttctt |
33388663 |
T |
|
| Q |
101 |
ccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacag |
200 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||| |
|
|
| T |
33388664 |
ccagggaggcctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacag |
33388763 |
T |
|
| Q |
201 |
ggcccacc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
33388764 |
ggcccacc |
33388771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University