View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_257 (Length: 251)
Name: NF6867A_low_257
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_257 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 43085364 - 43085594
Alignment:
| Q |
13 |
tgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatccaactacggctttctgctcaaaagccttgtgctcgaagaatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43085364 |
tgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatccaactacggctttctgctcaaaagccttgtgctcgaagaatct |
43085463 |
T |
|
| Q |
113 |
cattttgagtgccaaatgaagggaacaaaatgtgacaagtagatgccagcttgtcagagttgtagctgcatgaaaagacaattttaacttgtaatcccag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43085464 |
cattttgagtgccaaatgaagggaacaaaatgtgacaagtagatgccagcttgtcagagttgtagctgcatgaaaagacaattttaacttgtaatcccag |
43085563 |
T |
|
| Q |
213 |
gcaatgcactgaatataaaagggaaggctca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43085564 |
gcaatgcactgaatataaaagggaaggctca |
43085594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 43093328 - 43093487
Alignment:
| Q |
24 |
ctcaaatttaaaagtccaattgagattccatttaaaatcccaaatccaactacggctttctgctcaaaagccttgtgctcgaagaatctcattttgagtg |
123 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||| ||| |||||||| | || |||||||||||||||| |||||||||||| ||| ||||||| |||| |
|
|
| T |
43093328 |
ctcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaaaaggcttgtgctcgaaaaatttcatttttagtg |
43093427 |
T |
|
| Q |
124 |
ccaaatgaagggaacaaaatgtgacaagtagatgccagcttgtcagagttgtagctgcat |
183 |
Q |
| |
|
||| |||||| ||||||||||| ||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
43093428 |
ccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcat |
43093487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University