View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_271 (Length: 249)
Name: NF6867A_low_271
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_271 |
 | |
|
| [»] scaffold0945 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24546240 - 24546007
Alignment:
| Q |
1 |
tttaccccatttactaattacattacaaaattaagctctctattatgatataaatggcatggccataattgcttctgttttcgttctttctacaaaccca |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
24546240 |
tttaccccttttactaattatattacaaaattaagctctctattatgatataaatgacatggccatcattgcttcttttttcgttctttctacaaaccca |
24546141 |
T |
|
| Q |
101 |
tgaatgcttcttttatttggaccggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaagattaggct |
200 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24546140 |
tgaatgcttctttt-tttggactggtaattccatagtgtttgcttcaatttagagtagactcaaattaacaaagattgacttcatctttaagattaggct |
24546042 |
T |
|
| Q |
201 |
gaagagcctcttattggttttacacttcaattata |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24546041 |
gaagagcctcttattggttttacacttcaattata |
24546007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 722 - 855
Alignment:
| Q |
94 |
aaacccatgaatgcttcttttatttggac-cggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaag |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
722 |
aaacccatgaatgcttcttttatttggacttggtcattccaaagtgtttgcttcaatt-----tagactcaaatt-agtaagattgacttcatctttaag |
815 |
T |
|
| Q |
193 |
attaggctgaagagcctcttattggttttacacttcaatta |
233 |
Q |
| |
|
||| | || || || ||||||| ||||||| ||||||||| |
|
|
| T |
816 |
attggacttaa-agtctcttataggttttatgcttcaatta |
855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University