View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_28 (Length: 427)
Name: NF6867A_low_28
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 33102507 - 33102087
Alignment:
| Q |
1 |
tgaacatgaagcttaccatcatcaacaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataa |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102507 |
tgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataa |
33102408 |
T |
|
| Q |
101 |
tagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102407 |
tagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaag |
33102308 |
T |
|
| Q |
201 |
aaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102307 |
aaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagag |
33102208 |
T |
|
| Q |
301 |
aagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102207 |
aagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcga |
33102108 |
T |
|
| Q |
401 |
tgaacctatagttcatggcat |
421 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
33102107 |
tgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
63 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
162 |
Q |
| |
|
|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
163 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
262 |
Q |
| |
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| |||||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || | |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
|
| Q |
263 |
ttcccataac |
272 |
Q |
| |
|
|||||||||| |
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|
| T |
52716531 |
ttcccataac |
52716522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
67 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
128 |
Q |
| |
|
|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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|
| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 34 - 416
Target Start/End: Original strand, 10838608 - 10838990
Alignment:
| Q |
34 |
gcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataa |
133 |
Q |
| |
|
||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || ||||| || ||||| |||||||| ||||| | |
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| T |
10838608 |
gcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatggaagccgcggtttctggaaactgctccatga |
10838707 |
T |
|
| Q |
134 |
ttagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaata |
233 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| | || | |||||||||||| ||||||||||||||||||||||||||||| | | |||| ||||| |
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|
| T |
10838708 |
ttaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaata |
10838807 |
T |
|
| Q |
234 |
ttcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccatta |
333 |
Q |
| |
|
|||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || |||||||| |||||||| ||||| | ||||| |
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| T |
10838808 |
atcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaagattgttatcatccattctaaattgccattt |
10838907 |
T |
|
| Q |
334 |
gctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagttcat |
416 |
Q |
| |
|
||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || |||||||| ||||||| |
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|
| T |
10838908 |
ttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatgaacctgaagttcat |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 34971234 - 34971055
Alignment:
| Q |
66 |
agaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaaga |
165 |
Q |
| |
|
||||| ||||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | | |
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|
| T |
34971234 |
agaaagaacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaa |
34971135 |
T |
|
| Q |
166 |
aacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
245 |
Q |
| |
|
||||| | ||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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|
| T |
34971134 |
aacaacatcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
174 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
273 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
274 |
aaagtgtt |
281 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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