View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_289 (Length: 248)

Name: NF6867A_low_289
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_289
NF6867A_low_289
[»] scaffold0145 (1 HSPs)
scaffold0145 (12-239)||(12553-12780)
[»] chr4 (4 HSPs)
chr4 (12-239)||(16284937-16285164)
chr4 (83-239)||(18231449-18231603)
chr4 (83-239)||(11555916-11556070)
chr4 (113-226)||(11098355-11098468)
[»] chr6 (4 HSPs)
chr6 (12-239)||(10641221-10641448)
chr6 (14-239)||(14970061-14970288)
chr6 (85-239)||(10906699-10906853)
chr6 (83-199)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (83-240)||(22614701-22614858)
chr7 (83-239)||(11655475-11655631)
chr7 (12-239)||(20025971-20026198)
chr7 (125-226)||(13477489-13477596)
chr7 (12-184)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (12-239)||(24831927-24832160)
chr5 (89-224)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (12-239)||(14481527-14481760)
chr3 (24-174)||(17790941-17791091)
chr3 (24-174)||(19099381-19099531)
chr3 (90-150)||(22159871-22159931)
chr3 (90-150)||(21975275-21975335)
chr3 (90-150)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (12-227)||(44586360-44586574)
chr2 (89-174)||(16862347-16862432)
chr2 (12-116)||(24786268-24786372)
[»] scaffold1001 (1 HSPs)
scaffold1001 (83-239)||(1390-1545)
[»] chr1 (1 HSPs)
chr1 (89-202)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 12780 - 12553
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12780 atgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatgataa 12681  T
Q  112 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12680 agagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttat 12581  T
Q  212 attataataatgatgagaatgatgatgt 239  Q
    ||||||||||||||||||||||||||||    
T  12580 attataataatgatgagaatgatgatgt 12553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 16284937 - 16285164
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  16284937 atgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatgataa 16285036  T
Q  112 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16285037 agagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttat 16285136  T
Q  212 attataataatgatgagaatgatgatgt 239  Q
    ||||||||||||||||||||||||||||    
T  16285137 attataataatgatgagaatgatgatgt 16285164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 18231449 - 18231603
Alignment:
Q  83 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 182  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| |||||||||||||||||||||||    
T  18231449 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa 18231546  T
Q  183 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 239  Q
    ||||||||||| | |||||||||  || ||||||||||||||||||||||| |||||    
T  18231547 attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgt 18231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
Q  83 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 182  Q
    ||||||||||||||||||  || ||||| ||||||||||||  || ||| ||| || | ||| ||||| ||||||| |||||||||||||||||||||||    
T  11556070 gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa 11555973  T
Q  183 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 239  Q
    ||||||||||| ||||||| |||  || ||||||||||||||||||||||| |||||    
T  11555972 attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt 11555916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
Q  113 gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta 212  Q
    ||||||||||| |||||||||||| | |||  |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||| ||||  || ||    
T  11098355 gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata 11098454  T
Q  213 ttataataatgatg 226  Q
    ||||||||||||||    
T  11098455 ttataataatgatg 11098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 10641221 - 10641448
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    ||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| ||   ||||||||||||||||||||||||||||     
T  10641221 atgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggatgatag 10641320  T
Q  112 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 211  Q
    |||||||||| | |||||||||||||| | ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  10641321 agagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgaggttat 10641420  T
Q  212 attataataatgatgagaatgatgatgt 239  Q
    ||||||||||||||||||||||||||||    
T  10641421 attataataatgatgagaatgatgatgt 10641448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 14970288 - 14970061
Alignment:
Q  14 gaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaag 113  Q
    ||||| |||||||||||||| | |||||    ||||||||||||| ||||| ||||||| ||| ||   ||||| ||||||||||||  |||||||| ||    
T  14970288 gaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatgatagag 14970189  T
Q  114 agtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatgagtttgt 211  Q
    |||||||||| ||||||||| |||| | ||| ||| | ||||||  |||||||||||  |||| || |||||||||  ||||||||||||||||  || |    
T  14970188 agtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatgatgttat 14970089  T
Q  212 attataataatgatgagaatgatgatgt 239  Q
    ||||||||||  |||||||||| |||||    
T  14970088 attataataacaatgagaatgacgatgt 14970061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 10906699 - 10906853
Alignment:
Q  85 taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 184  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||| ||||||||||   ||||||||| | |  |  ||||||||| ||||||| || | ||    
T  10906699 taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat 10906798  T
Q  185 tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 239  Q
     | || |||| ||||||||||  || ||||||||||||||||||||||| |||||    
T  10906799 aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgt 10906853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
Q  83 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 182  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || ||    
T  9191181 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa 9191082  T
Q  183 attactacgatgggaaa 199  Q
    || | ||||||| ||||    
T  9191081 ataaatacgatgagaaa 9191065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 22614701 - 22614858
Alignment:
Q  83 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 182  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  22614701 gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa 22614800  T
Q  183 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgta 240  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||    
T  22614801 attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgta 22614858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 11655631 - 11655475
Alignment:
Q  83 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 182  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || |||||||||||||||||||||||    
T  11655631 gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa 11655532  T
Q  183 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 239  Q
    ||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||    
T  11655531 attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgt 11655475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 20026198 - 20025971
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    ||||||| ||||||| |||||| |||||||  | |  ||||||||||||||||||||| || ||| ||   |||||||| ||||||||| |  ||||||     
T  20026198 atgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgatag 20026099  T
Q  112 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 211  Q
    ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| |||||||||  || |    
T  20026098 agaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgttat 20025999  T
Q  212 attataataatgatgagaatgatgatgt 239  Q
    ||||||||||  |||| |||||||||||    
T  20025998 attataataacaatgacaatgatgatgt 20025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
Q  125 ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa 218  Q
    |||||||||||||| ||||| ||||| ||||||| ||||||||||      |||||||||||||||||||||||||||||| |||||  || ||||||||    
T  13477489 ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa 13477588  T
Q  219 taatgatg 226  Q
    ||||||||    
T  13477589 taatgatg 13477596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 110  Q
    ||||||| |||||||||||| | || |||| || || || ||||||||| ||||||  |||| ||| ||   |||||||||||||||||| ||| |||||    
T  4531649 atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata 4531748  T
Q  111 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 184  Q
     |||||||||||| ||| ||| |||| | | ||  ||||| ||||| | | |||||||||||||||||| ||||    
T  4531749 gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat 4531820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 24831927 - 24832160
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| ||   |||| | ||||||| |||||||||||||     
T  24831927 atgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatgatag 24832026  T
Q  112 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaatgatga 205  Q
    |||||||||||| |||||||||||| | | ||| ||||| |||| || |||||||||      |||||||||||||||||||||||||| ||||||||||    
T  24832027 agagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaatgatga 24832126  T
Q  206 gtttgtattataataatgatgagaatgatgatgt 239  Q
    | || || ||||||| |||||||||||| |||||    
T  24832127 ggttatactataatattgatgagaatgacgatgt 24832160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
Q  89 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 188  Q
    |||||||||||| ||| ||||| |||||||||||  ||| |||||||||  | ||| ||||| ||||| | | ||| ||||| ||||||||  ||| | |    
T  13935849 gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat 13935750  T
Q  189 acgatgggaaatgatgagtttgtattataataatga 224  Q
    ||||| |||||| ||||  || ||||||||||||||    
T  13935749 acgat-ggaaataatgatgttatattataataatga 13935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 14481527 - 14481760
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| ||   ||||   ||||||| |||||||||||||     
T  14481527 atgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatgatag 14481626  T
Q  112 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaatgatga 205  Q
    |||||||||||| |||||||||||||| | ||| ||||| |||| || ||||||      |||||||||||||||||||||||||||||||| |||||||    
T  14481627 agagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacatgatga 14481726  T
Q  206 gtttgtattataataatgatgagaatgatgatgt 239  Q
    | || || ||||||| ||||||| |||| |||||    
T  14481727 ggttatactataatattgatgaggatgacgatgt 14481760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 17791091 - 17790941
Alignment:
Q  24 ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg 123  Q
    ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | ||||||||||||    
T  17791091 ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg 17790992  T
Q  124 gggagtcctataactataacagagagtaatgacgagtaatattatatatat 174  Q
     |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  17790991 aggagtcctataactttgacagagagtgatgatgattaatattatatatat 17790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 19099531 - 19099381
Alignment:
Q  24 ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg 123  Q
    ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | ||||||||||||    
T  19099531 ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg 19099432  T
Q  124 gggagtcctataactataacagagagtaatgacgagtaatattatatatat 174  Q
     |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  19099431 aggagtcctataactttgacagagagtgatgatgattaatattatatatat 19099381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
Q  90 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 150  Q
    ||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| |||||    
T  22159931 tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt 22159871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
Q  90 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 150  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21975335 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
Q  90 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 150  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21997766 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21997706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 110  Q
    ||||||| | |||||||||| | |||||||  ||||||| ||||||| ||||||||  |||| |||  |   |||||||||||||||||| ||| |||||    
T  44586360 atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata 44586459  T
Q  111 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg 210  Q
     |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || |||||||||||||||||||||||||||||||  ||||||||||  ||     
T  44586460 gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta 44586557  T
Q  211 tattataataatgatga 227  Q
     ||||||||||| ||||    
T  44586558 aattataataataatga 44586574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
Q  89 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 174  Q
    ||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || ||   || || |||||||||||||||    
T  16862432 gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat 16862347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 24786372 - 24786268
Alignment:
Q  12 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 111  Q
    ||||||| |||||||||||||| |||||||  | |||||| |||||| |||||||| | || ||| || | || ||||||  ||||||| || ||||||     
T  24786372 atgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaatgatag 24786273  T
Q  112 agagt 116  Q
    |||||    
T  24786272 agagt 24786268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 1545 - 1390
Alignment:
Q  83 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 182  Q
    ||||| ||| ||| ||| |||||||||| |||||| | ||| |||||||||||||  | | ||||||| ||||| | ||||||| ||||| || ||| ||    
T  1545 gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa 1447  T
Q  183 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 239  Q
    ||||| || |||| |||||||||| || ||||||||||||||||||||||| |||||    
T  1446 attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgt 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
Q  89 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 188  Q
    |||||||||||| |||  |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | |    
T  1567041 gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat 1567140  T
Q  189 acgatgggaaatga 202  Q
    |||||| |||||||    
T  1567141 acgatgagaaatga 1567154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University