View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_29 (Length: 427)
Name: NF6867A_low_29
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 25 - 421
Target Start/End: Original strand, 45945532 - 45945928
Alignment:
| Q |
25 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcaaagatacgaagtttggagtaatt |
124 |
Q |
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| T |
45945532 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaatt |
45945631 |
T |
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| Q |
125 |
gatgacataatatgccatagaaaattcgagttggatggctggcaggtacacaggatcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
224 |
Q |
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| T |
45945632 |
gatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
45945731 |
T |
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| Q |
225 |
tgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaat |
324 |
Q |
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| T |
45945732 |
tgttcttcaggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaat |
45945831 |
T |
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| Q |
325 |
cagcgtttccagcagggaaagtcacaaaggcacggcctttaccaccgtcgagttttggtttctcaacggtagcattgacggcggtggtggtgattgc |
421 |
Q |
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| T |
45945832 |
cagcgtttccagcaaggaaagtcacaaaggcacggcctttaccaccgtcgagttttggtttctcaacggtagcattcacggcggtggtggtgattgc |
45945928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 55221583 - 55221538
Alignment:
| Q |
105 |
atacgaagtttggagtaattgatgacataatatgccatagaaaatt |
150 |
Q |
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| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaatt |
55221538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 55221397 - 55221333
Alignment:
| Q |
291 |
cctttggctaaaccaacaacacctttgatgtaatcagcgtttccagcagggaaagtcacaaaggc |
355 |
Q |
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||||||||||||||||| |||||||||| || ||| | |||||| || |||| ||||||||||| |
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| T |
55221397 |
cctttggctaaaccaaccacacctttgacatagtcaccatttccaacaaggaaggtcacaaaggc |
55221333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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