View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_3 (Length: 665)

Name: NF6867A_low_3
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_3
NF6867A_low_3
[»] chr4 (1 HSPs)
chr4 (38-661)||(54423237-54423862)
[»] chr1 (7 HSPs)
chr1 (38-597)||(20127319-20127880)
chr1 (127-608)||(27645283-27645764)
chr1 (305-590)||(13190424-13190709)
chr1 (463-539)||(12461045-12461121)
chr1 (146-182)||(15162882-15162918)
chr1 (307-638)||(44137419-44137750)
chr1 (591-661)||(20120986-20121056)
[»] chr8 (2 HSPs)
chr8 (463-602)||(9182994-9183133)
chr8 (463-602)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (463-602)||(10161217-10161356)
chr6 (463-539)||(16860983-16861059)
chr6 (482-596)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (463-539)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (475-602)||(238965-239092)
[»] chr3 (1 HSPs)
chr3 (361-403)||(51142253-51142295)


Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 38 - 661
Target Start/End: Original strand, 54423237 - 54423862
Alignment:
Q  38 attagagctgaatgcaatagccgattcaccataatttattgcttgcccggatgcatgctcataatgagagagcttccttgagatgttgcgcttcagccat 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  54423237 attagagctgaatgcaatagccgattcaccataatttattgcttgcccggatgcatgctcataatgagagagtttccttgagatgttgcacttcagccat 54423336  T
Q  138 tgttgctttacaaaataaaaaa-ctgtcatctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgcatcttgcctcttaa 236  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54423337 tgttgctttacaaaataaaaaaactgtcatctgtaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgtatcttgcctcttaa 54423436  T
Q  237 ctcgctgtttt-ttatggatgctgataatccttctgcgcaaagaatgtatagatatggtgagagtggggagccttgacggagacctcgttcgggagtgtt 335  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  54423437 ctcgctgtttttttatggatgctgataatccttctacacaaagaatgtatagatatggtgagagtgggcagccttgatggagacctcgttcgggagtgat 54423536  T
Q  336 agggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaagtccactgtgaactgaaccccattttaaat 435  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54423537 agggccaatgcggtcgccgttgaaaatgacgtgatattcaacggaggtgatgcacatcatcatccaggaagtccactgtgaactgaaccccattttaaat 54423636  T
Q  436 aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgca 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54423637 aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctattttttcttttgttttgcagcgca 54423736  T
Q  536 tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttggaaaattcatttgttaataagtgg 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  54423737 tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttgggaaatccatttgttaataagtgg 54423836  T
Q  636 acgaagacgattgaccaggaccttag 661  Q
    ||||||||||||||||||||||||||    
T  54423837 acgaagacgattgaccaggaccttag 54423862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 38 - 597
Target Start/End: Complemental strand, 20127880 - 20127319
Alignment:
Q  38 attagagctgaatgcaatagccgattcaccataatttattgcttgcccggatgcatgctcataatgagagagc--ttccttgagatgttgcgcttcagcc 135  Q
    |||||||||||| || |||||||||| |||||| ||||||||||| ||||||||||||||||| || |||||   ||||||||||||||||| |||||||    
T  20127880 attagagctgaaagctatagccgatttaccatagtttattgcttggccggatgcatgctcatagtgcgagagaatttccttgagatgttgcgtttcagcc 20127781  T
Q  136 attgttgctttacaaaataaaaaactgtcatctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgcatcttgcctctta 235  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| || || | ||| |||||||    
T  20127780 attgttgctttgcagaataaaaaactgtcatctgcaaataataggtgactgataggtggggctgtgcgacaaatacgagttccatgaacctttcctctta 20127681  T
Q  236 actcgctgttttttatggatgctgataatccttctgcgcaaagaatgtatagatatggtgagagtggggagccttgacggagacctcgttcgggagtgtt 335  Q
    | ||   ||||||||| | ||| |||||||||||||||||||| |||||||| || |||||||| ||| |||||||  | |||||||||||||||||| |    
T  20127680 attcatagttttttatagctgcagataatccttctgcgcaaaggatgtataggtaaggtgagagggggcagccttggtgaagacctcgttcgggagtgat 20127581  T
Q  336 agggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaagtccactgtgaactgaaccccattttaaat 435  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||      
T  20127580 agggccaatgcggtcaccattaaaaatgacgtggtattcaacggaggtgatgcacatcatcatccaggaggtccattgtgaactgaaacccattttaagg 20127481  T
Q  436 aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgca 535  Q
    | ||| | ||||||||| | |||| |||||||||| |||||||||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||    
T  20127480 agaatggatttgaggtaaggccaacttacactatcaaatgccttggatatatcaagttttagtgccacctcgcctattttcccttttgttttgcagcgca 20127381  T
Q  536 tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaag 597  Q
    ||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||||    
T  20127380 tatgatggaggacttcaaaagcggttagcgcattatccatgattgagcgagaatgcacaaag 20127319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 127 - 608
Target Start/End: Original strand, 27645283 - 27645764
Alignment:
Q  127 gcttcagccattgttgctttacaaaataaaaaactgtcatctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgcatct 226  Q
    ||||||||||| || ||||| || |||||||| || |||||||| ||||||||||| || |  | ||| |||| ||| ||||||||  |||| || | ||    
T  27645283 gcttcagccatggtagctttgcagaataaaaagctatcatctgcgaataataagtggctaaccgacggtgctgcgcggcagatacggttgccatgaagct 27645382  T
Q  227 tgcctcttaactcgctgttttttatggatgctgataatccttctgcgcaaagaatgtatagatatggtgagagtggggagccttgacggagacctcgttc 326  Q
      || ||||| || |  ||||| ||   ||||||||  ||||| || || |  ||||| ||||| |||||||| ||| ||||||| ||||| || |||||    
T  27645383 gaccccttaattcacgatttttaataattgctgataggccttcggcacagatgatgtagagataaggtgagagagggcagccttgccggagtccacgttc 27645482  T
Q  327 gggagtgttagggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaagtccactgtgaactgaacccc 426  Q
     || ||| |||| |||||||| ||||| ||||| || || |||||||| || || ||||||| |||||||||||| ||   |||| | | ||  || |||    
T  27645483 aggggtgataggtccaatgcgatcgccattaaagataacatgatattccacagaagtgatgcacatcatcatccatgatacccaccgagtacaaaaaccc 27645582  T
Q  427 attttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttt 526  Q
    || ||    | ||||||||| |||||| ||||  | |||||||| || ||||| || || |||||||| |||||||||||||| ||||| ||||| ||||    
T  27645583 atcttgtcaagaatagctttaaggtacaaccagctaacactatcaaaagccttagagatatcaagtttcagagccacctcaccaattttacctttggttt 27645682  T
Q  527 tgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttc 608  Q
    |||||||||||||||| |  | ||| || || ||||  |||||||||||||| ||||| || || || || |||||||||||    
T  27645683 tgcagcgcatatgatgtaagatttcaaaggccgttaaagcattatccatgatagagcgggagtgaacgaatgctgcctgttc 27645764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 305 - 590
Target Start/End: Original strand, 13190424 - 13190709
Alignment:
Q  305 agccttgacggagacctcgttcgggagtgttagggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccagga 404  Q
    ||||||| |||||||||| ||| || ||  ||||| |||| ||||| ||||| ||||| ||||||||||| || ||  |||||| ||||| |||||| ||    
T  13190424 agccttgtcggagacctctttccggggtaatagggtcaattcggtcaccgttgaaaataacgtgatattcgacagacatgatgcacatcaacatccaaga 13190523  T
Q  405 agtccactgtgaactgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacc 504  Q
       ||| |||||||  || ||||| |||   | |||||||| |||||| |||||  |||  ||||| || || || ||||| |||||||| | ||| ||     
T  13190524 gacccattgtgaacaaaatcccatcttagtaagaatagcttcgaggtatgaccagcttatgctatcaaaagcttttgatatatcaagtttcatagcgacg 13190623  T
Q  505 tcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatg 590  Q
    | ||||| ||| |||||    ||||| |||||||| ||||||| ||| ||||||||||  |||||||||||||| || ||||||||    
T  13190624 ttacctagtttccctttgtgcttgcaccgcatatggtgaagaatttcaaatgctgttaaagcattatccatgatggaacgagaatg 13190709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 539
Target Start/End: Original strand, 12461045 - 12461121
Alignment:
Q  463 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 539  Q
    ||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  12461045 acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 12461121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 15162882 - 15162918
Alignment:
Q  146 tacaaaataaaaaactgtcatctgcaaataataagtg 182  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15162882 tacaaaataaaaaacagtcatctgcaaataataagtg 15162918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 638
Target Start/End: Complemental strand, 44137750 - 44137419
Alignment:
Q  307 ccttgacggagacctcgttcgggagtgttagggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaag 406  Q
    ||||| || ||||| |||| ||||||  |||| || ||||| || || |||||||||| ||| || || || ||||| || | |||||||||||| |||     
T  44137750 ccttggcgcagaccacgttggggagtaataggaccgatgcgatcaccattaaaaatgatgtggtactcgacagaggtaatacacatcatcatccaagaaa 44137651  T
Q  407 tccactgtgaactgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctc 506  Q
    |||| |  | | | |||||||| ||  | | ||||||||  ||||| |||||| ||||||| || || ||||| || ||||| |  || | ||| || ||    
T  44137650 tccatttagcattaaaccccatcttggaaagaatagcttcaaggtaggaccaacttacactgtcaaaagccttagagatgtctaacttcaaagcaacttc 44137551  T
Q  507 acctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgt 606  Q
    ||| |||||||||||  ||||||| |||||||| || |||   || |||| |||||  || ||||||||||| || ||||| || |||||||| | ||||    
T  44137550 accaatttttcctttccttttgcaacgcatatggtggagagtctcaaatgttgttaaagcgttatccatgatagaacgagagtgaacaaaggcagactgt 44137451  T
Q  607 tcttggaaaattcatttgttaataagtggacg 638  Q
    ||| |  | || ||||||||||| || |||||    
T  44137450 tctggtgagatccatttgttaatgagaggacg 44137419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 661
Target Start/End: Complemental strand, 20121056 - 20120986
Alignment:
Q  591 cacaaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttag 661  Q
    |||||||||||| ||||||||| |||| |||||||| || | |||| | ||||||||| | ||||||||||    
T  20121056 cacaaaggctgcttgttcttgggaaatccatttgttgattaatggatggagacgattggcaaggaccttag 20120986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 602
Target Start/End: Original strand, 9182994 - 9183133
Alignment:
Q  463 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 562  Q
    |||||||| || ||||| || ||||||||||| ||||| || ||||||  |||||||||  | ||||||||||||| ||| |||| ||| || ||||| |    
T  9182994 acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga 9183093  T
Q  563 gcgcattatccatgattgagcgagaatgcacaaaggctgc 602  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  9183094 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 9183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 602
Target Start/End: Complemental strand, 11625279 - 11625140
Alignment:
Q  463 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 562  Q
    |||||||| || ||||| || ||||||||||| ||||| || |||||| ||||||||||  | ||||||||||||| ||| || | ||| || ||||| |    
T  11625279 acactatcaaaagccttcgaaatgtcaagttttagagctacatcacctttttttcctttattcttgcagcgcatataatgtagtatttcaaaggctgtga 11625180  T
Q  563 gcgcattatccatgattgagcgagaatgcacaaaggctgc 602  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  11625179 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 11625140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 602
Target Start/End: Original strand, 10161217 - 10161356
Alignment:
Q  463 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 562  Q
    |||||||| || ||||| || ||||||||||| ||||| || ||||||  |||||||||  | ||||||||||||| ||| |||| ||| || ||||| |    
T  10161217 acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga 10161316  T
Q  563 gcgcattatccatgattgagcgagaatgcacaaaggctgc 602  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  10161317 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 10161356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 16861059 - 16860983
Alignment:
Q  463 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 539  Q
    ||||| || ||||| ||||||||||||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  16861059 acactgtcaaatgctttggatatgtcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 16860983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 596
Target Start/End: Original strand, 21740989 - 21741103
Alignment:
Q  482 atatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattga 581  Q
    |||| |||||||| | ||||||||||||| | || ||||| | ||| || |||||||||||||||| |||| ||||  | || ||||| ||||| || ||    
T  21740989 atatatcaagtttcaaagccacctcacctttcttccctttcgatttacaacgcatatgatgaagaatttcgtatgccatcagagcattgtccataatgga 21741088  T
Q  582 gcgagaatgcacaaa 596  Q
    | ||||||| |||||    
T  21741089 gagagaatggacaaa 21741103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 539
Target Start/End: Original strand, 1937 - 2013
Alignment:
Q  463 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 539  Q
    ||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  1937 acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 238965 - 239092
Alignment:
Q  475 gccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatcca 574  Q
    ||||||||||| ||||| || | ||||||||| || ||||| |||||| | ||||| ||||||   ||||||| ||| || |||| ||| ||||||||||    
T  238965 gccttggatatatcaagctttaaagccacctcgccaattttaccttttttcttgcatcgcataaagtgaagaatttcaaaggctgatagagcattatcca 239064  T
Q  575 tgattgagcgagaatgcacaaaggctgc 602  Q
    |||| || | |||  | |||||||||||    
T  239065 tgatggatctagatggaacaaaggctgc 239092  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 51142253 - 51142295
Alignment:
Q  361 atgacgtgatattcaacggaggtgatgcgcatcatcatccagg 403  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||    
T  51142253 atgacatgatattcaactgaggtgatgcacatcatcatccagg 51142295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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