View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_30 (Length: 426)
Name: NF6867A_low_30
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_30 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 111055 - 110659
Alignment:
| Q |
16 |
gacatcacgttcttaataataaaaagagtactaaacatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgt |
115 |
Q |
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| T |
111055 |
gacatcacgttcttaataataaaaagagtactaagcatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgt |
110956 |
T |
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| Q |
116 |
acttcaaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattag |
215 |
Q |
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| T |
110955 |
acttcaaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattag |
110856 |
T |
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| Q |
216 |
cctgtaagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataaagaaatcatagaatcacacaaaccgatttcagcataca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
110855 |
cctgtaagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataa--aaatcatagaatcacaccaaccgatttcagcataca |
110758 |
T |
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| Q |
316 |
cttatagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaatgatgtccatc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
110757 |
cttatagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaaagatttccatc |
110659 |
T |
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