View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_306 (Length: 245)

Name: NF6867A_low_306
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_306
NF6867A_low_306
[»] chr6 (14 HSPs)
chr6 (1-233)||(13656096-13656328)
chr6 (174-220)||(1368208-1368254)
chr6 (179-233)||(7897126-7897180)
chr6 (182-233)||(18904276-18904327)
chr6 (181-216)||(21029385-21029420)
chr6 (182-233)||(27667171-27667222)
chr6 (179-233)||(20568293-20568346)
chr6 (182-220)||(32616395-32616433)
chr6 (182-220)||(32621603-32621641)
chr6 (179-216)||(10780126-10780162)
chr6 (179-216)||(14333477-14333514)
chr6 (179-220)||(32142057-32142098)
chr6 (168-236)||(978139-978206)
chr6 (179-223)||(23610337-23610380)
[»] chr7 (19 HSPs)
chr7 (166-233)||(47440818-47440885)
chr7 (182-233)||(46758253-46758304)
chr7 (167-233)||(20101660-20101726)
chr7 (165-223)||(29461833-29461890)
chr7 (167-220)||(13702021-13702074)
chr7 (180-216)||(40708182-40708218)
chr7 (182-233)||(34891217-34891268)
chr7 (182-233)||(46645720-46645771)
chr7 (179-233)||(21105609-21105662)
chr7 (165-219)||(38547971-38548025)
chr7 (167-221)||(40518909-40518962)
chr7 (179-240)||(3532587-3532647)
chr7 (179-216)||(4346667-4346703)
chr7 (168-233)||(30806113-30806177)
chr7 (167-216)||(34773225-34773273)
chr7 (164-216)||(3830059-3830110)
chr7 (184-232)||(28735235-28735282)
chr7 (200-240)||(29339419-29339459)
chr7 (179-239)||(41084048-41084107)
[»] chr4 (21 HSPs)
chr4 (174-240)||(45665032-45665098)
chr4 (178-229)||(39401008-39401059)
chr4 (167-233)||(23176729-23176795)
chr4 (179-216)||(2888879-2888916)
chr4 (179-234)||(32898445-32898500)
chr4 (165-220)||(33933760-33933814)
chr4 (165-216)||(46562640-46562691)
chr4 (166-233)||(55055912-55055978)
chr4 (178-216)||(2649752-2649789)
chr4 (178-216)||(7241921-7241959)
chr4 (174-216)||(8494988-8495029)
chr4 (183-233)||(45303991-45304041)
chr4 (179-213)||(52869031-52869065)
chr4 (165-206)||(3161016-3161057)
chr4 (179-216)||(20799413-20799449)
chr4 (179-220)||(23142774-23142815)
chr4 (179-216)||(46545557-46545594)
chr4 (167-216)||(46676517-46676565)
chr4 (179-216)||(50362158-50362194)
chr4 (182-222)||(7513400-7513440)
chr4 (179-223)||(46206586-46206629)
[»] chr3 (26 HSPs)
chr3 (179-233)||(25883996-25884050)
chr3 (179-233)||(46336510-46336564)
chr3 (179-217)||(10828478-10828516)
chr3 (179-216)||(24120439-24120476)
chr3 (183-220)||(44880576-44880613)
chr3 (164-233)||(45118634-45118702)
chr3 (178-233)||(4227752-4227806)
chr3 (182-233)||(15085692-15085743)
chr3 (183-214)||(18554739-18554770)
chr3 (182-233)||(27329940-27329991)
chr3 (182-233)||(44625233-44625284)
chr3 (182-233)||(51879106-51879157)
chr3 (182-220)||(34102077-34102115)
chr3 (178-240)||(36472432-36472494)
chr3 (182-220)||(46767354-46767392)
chr3 (183-216)||(16873795-16873828)
chr3 (179-216)||(18870744-18870780)
chr3 (183-216)||(22251479-22251512)
chr3 (179-216)||(35347314-35347351)
chr3 (167-216)||(45096020-45096068)
chr3 (179-216)||(45431954-45431990)
chr3 (182-219)||(49028965-49029002)
chr3 (168-232)||(31586945-31587008)
chr3 (179-223)||(35200563-35200607)
chr3 (165-233)||(49443431-49443498)
chr3 (165-221)||(49983728-49983783)
[»] chr1 (14 HSPs)
chr1 (179-223)||(33200047-33200091)
chr1 (179-216)||(3481566-3481603)
chr1 (167-214)||(2817394-2817440)
chr1 (179-216)||(9968495-9968532)
chr1 (183-216)||(28393777-28393810)
chr1 (179-214)||(11344446-11344481)
chr1 (179-214)||(11502466-11502501)
chr1 (182-233)||(18512583-18512634)
chr1 (179-233)||(10052479-10052533)
chr1 (182-220)||(13763772-13763810)
chr1 (179-233)||(46959741-46959795)
chr1 (167-236)||(4126892-4126961)
chr1 (179-216)||(21400042-21400078)
chr1 (182-222)||(18911862-18911902)
[»] scaffold0555 (1 HSPs)
scaffold0555 (166-229)||(9307-9370)
[»] chr8 (12 HSPs)
chr8 (183-233)||(14142788-14142838)
chr8 (183-233)||(14146225-14146275)
chr8 (183-220)||(14583209-14583246)
chr8 (168-230)||(4990779-4990841)
chr8 (176-234)||(18412562-18412619)
chr8 (179-216)||(8999910-8999947)
chr8 (168-216)||(42208488-42208535)
chr8 (174-216)||(36122523-36122565)
chr8 (179-216)||(11708992-11709028)
chr8 (179-220)||(13059198-13059238)
chr8 (179-216)||(39821890-39821926)
chr8 (180-216)||(29908018-29908053)
[»] chr5 (24 HSPs)
chr5 (174-220)||(6734759-6734805)
chr5 (179-233)||(36422503-36422557)
chr5 (179-233)||(3198336-3198389)
chr5 (179-233)||(26902630-26902683)
chr5 (180-233)||(5195153-5195206)
chr5 (188-233)||(15715800-15715844)
chr5 (179-216)||(21139167-21139204)
chr5 (184-232)||(28871333-28871381)
chr5 (181-233)||(30209009-30209061)
chr5 (165-213)||(37054291-37054338)
chr5 (166-233)||(4067978-4068044)
chr5 (182-233)||(17891867-17891918)
chr5 (182-233)||(23937941-23937992)
chr5 (183-233)||(3740966-3741016)
chr5 (182-220)||(3821442-3821480)
chr5 (178-216)||(17861984-17862021)
chr5 (179-233)||(18928729-18928782)
chr5 (182-220)||(36068770-36068808)
chr5 (179-216)||(5485192-5485228)
chr5 (179-216)||(6489013-6489049)
chr5 (179-216)||(15889417-15889453)
chr5 (179-216)||(34436857-34436893)
chr5 (179-220)||(39800051-39800091)
chr5 (174-222)||(20224108-20224156)
[»] chr2 (19 HSPs)
chr2 (179-233)||(10463205-10463259)
chr2 (179-233)||(23405205-23405258)
chr2 (182-233)||(5947877-5947928)
chr2 (170-233)||(7717613-7717676)
chr2 (179-222)||(37600103-37600146)
chr2 (171-213)||(3169742-3169784)
chr2 (178-216)||(3197098-3197135)
chr2 (174-216)||(24592865-24592906)
chr2 (163-216)||(10065463-10065515)
chr2 (167-216)||(12124539-12124587)
chr2 (179-216)||(20565094-20565130)
chr2 (179-232)||(23919486-23919538)
chr2 (179-220)||(23984244-23984285)
chr2 (183-216)||(28442057-28442090)
chr2 (167-216)||(31963085-31963133)
chr2 (167-216)||(40099402-40099450)
chr2 (174-214)||(4927470-4927509)
chr2 (165-213)||(30089041-30089088)
chr2 (165-213)||(30125645-30125692)
[»] scaffold0010 (1 HSPs)
scaffold0010 (167-232)||(132256-132320)
[»] scaffold0250 (1 HSPs)
scaffold0250 (179-240)||(15014-15074)
[»] scaffold0003 (1 HSPs)
scaffold0003 (168-233)||(315647-315711)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 13656096 - 13656328
Alignment:
Q  1 actttgctctttgcaattttcatcatggttggccatggggacctccaattgtattttgcattaagaaaatttgtattggaaatgcaaaattgttgatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13656096 actttgctctttgcaattttcatcatggttggccatggggacctccaattgtattttgcattaagaaaatttgtattggaaatgcaaaattgttgatatt 13656195  T
Q  101 tatggaaagacatactagttgcttgcctctaatcccatgaagtttttcatagaaagcattgaagaagtccccatgaatttagctcagttggtagggacaa 200  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  13656196 tatggaaagacatactagttgcttgcctctaatcgcatgaaatttttcatagaaagcattgaagaagtccccttgagcttagctcagttggtagggacaa 13656295  T
Q  201 atgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||||| ||||    
T  13656296 atgcataatatatgcaggggtcgatgtttgaac 13656328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 1368254 - 1368208
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  1368254 tgaacttagctcagttggtagggacaaatgcacaatatatgcagggg 1368208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 7897180 - 7897126
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||| |||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  7897180 ttagatcagttggtagggataaatgcataatatatgcaggggtcggggttcgaac 7897126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 18904276 - 18904327
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||||||  ||||||||    
T  18904276 gctcagttggtagggacaaatgcattttatatgcaggggtcggggttcgaac 18904327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 21029420 - 21029385
Alignment:
Q  181 agctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  21029420 agctcagttggtagggacaaatgcataatatatgca 21029385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 27667171 - 27667222
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  27667171 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 27667222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 20568346 - 20568293
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||  ||||||||    
T  20568346 ttagctcagttggtaaggacat-tgcataatatatgcaggggtcggggttcgaac 20568293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 32616395 - 32616433
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32616395 gctcagttggtagggacaaatgcattttatatgcagggg 32616433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 32621641 - 32621603
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32621641 gctcagttggtagggacaaatgcattttatatgcagggg 32621603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 10780162 - 10780126
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10780162 ttagctcagttggtagggac-aatgcataatatatgca 10780126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 14333514 - 14333477
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  14333514 ttagttcagttggcagggacaaatgcataatatatgca 14333477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 32142098 - 32142057
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    ||||||||||||||||||||||||||||  |||||| |||||    
T  32142098 ttagctcagttggtagggacaaatgcattttatatgtagggg 32142057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 978206 - 978139
Alignment:
Q  168 tccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacacc 236  Q
    ||||| ||| |||||||||||| ||||||| |  |||||| |||||||||||||||  |||||||||||    
T  978206 tccccgtgagtttagctcagttagtagggatat-tgcatattatatgcaggggtcggggttcgaacacc 978139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 23610380 - 23610337
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcg 223  Q
    |||||||||||||||||||| | |||||||| |||||||||||||    
T  23610380 ttagctcagttggtagggac-attgcataatttatgcaggggtcg 23610337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 47440885 - 47440818
Alignment:
Q  166 agtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  47440885 agtccccatgagcttagctcagttggtagggacaaatgcataatatatgcaggggtcggggttcgaac 47440818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 46758253 - 46758304
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||||||  ||||||||    
T  46758253 gctcagttggtagggacaaatgcattttatatgcaggggtcggggttcgaac 46758304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 20101726 - 20101660
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||| ||| ||||| |||||||||| ||||||||||||| |||||||||||| ||  ||||||||    
T  20101726 gtccccgtgagtttagatcagttggtatggacaaatgcatattatatgcaggggccggggttcgaac 20101660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 29461890 - 29461833
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcg 223  Q
    |||| ||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||    
T  29461890 aagttcccgtgagtttaactcagttggtagggacaa-tgcataatatatgcaggggtcg 29461833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 13702021 - 13702074
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    ||||||||||  || |||||||||||||||||||||||||  ||||||||||||    
T  13702021 gtccccatgagctttgctcagttggtagggacaaatgcattttatatgcagggg 13702074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 40708182 - 40708218
Alignment:
Q  180 tagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||| ||||||||||||||||||||||||||||    
T  40708182 tagctcagctggtagggacaaatgcataatatatgca 40708218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 34891217 - 34891268
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  34891217 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 34891268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 46645720 - 46645771
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  46645720 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 46645771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 21105609 - 21105662
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||| ||| |||||||||||||||||| || |||| ||||||||    
T  21105609 ttagctcagttggtatgga-aaatgcataatatatgcaaggttcgaggttcgaac 21105662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 38547971 - 38548025
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggg 219  Q
    ||||||| || || ||| ||||||||  |||||||||||||||||||||||||||    
T  38547971 aagtcccgataaacttaactcagttgtcagggacaaatgcataatatatgcaggg 38548025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 40518962 - 40518909
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggt 221  Q
    |||||| |||| |||||||||||||||||||| | ||||||||||||| ||||||    
T  40518962 gtccccgtgaacttagctcagttggtagggac-attgcataatatatgtaggggt 40518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 3532587 - 3532647
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacaccaaac 240  Q
    |||| |||||||||||||| |  ||||||||||||||||||| ||| |||||||| ||||||    
T  3532587 ttagttcagttggtagggatat-tgcataatatatgcaggggccgaggttcgaaccccaaac 3532647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 4346667 - 4346703
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  4346667 ttagctcagttggtagggac-aatgcataatatatgca 4346703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 30806113 - 30806177
Alignment:
Q  168 tccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||| ||| ||||||||||||||||||||  | |||||| |||||||||||||||  ||||||||    
T  30806113 tccccgtgagtttagctcagttggtaggga-tattgcatattatatgcaggggtcggagttcgaac 30806177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 34773225 - 34773273
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||| ||||| ||||| ||||||||||||||| |||||||||||||||||    
T  34773225 gtcctcatgactttagttcagttggtagggac-aatgcataatatatgca 34773273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 3830059 - 3830110
Alignment:
Q  164 gaagtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||| | |||| ||||||||||| |||||||| |||||||||||||||||    
T  3830059 gaagtcctcgtgaacttagctcagtttgtagggac-aatgcataatatatgca 3830110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 28735282 - 28735235
Alignment:
Q  184 tcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaa 232  Q
    |||||||||| |||||| |||||||||||||||| |||||| |||||||    
T  28735282 tcagttggtaaggacaa-tgcataatatatgcagaggtcgaagttcgaa 28735235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 29339459 - 29339419
Alignment:
Q  200 aatgcataatatatgcaggggtcgatgttcgaacaccaaac 240  Q
    |||| |||||||||||||||||||| |||||||| ||||||    
T  29339459 aatgtataatatatgcaggggtcgaggttcgaaccccaaac 29339419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 41084048 - 41084107
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacaccaaa 239  Q
    ||||||||||||||||||| |  |||||| |||||||||||||||  |||||||| |||||    
T  41084048 ttagctcagttggtagggatat-tgcatattatatgcaggggtcggggttcgaaccccaaa 41084107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 45665098 - 45665032
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacaccaaac 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||    
T  45665098 tgaatttagctcagttggtagggacaaatgcataatatatgcagggaccggtgttcgaaccccaaac 45665032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 39401008 - 39401059
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttc 229  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  39401008 tttaactcagttggtaaggacaaatgcataatatatgcaggggtcgaagttc 39401059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 23176795 - 23176729
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||  || |||||||||||||||||||||||||  |||||||||||||||  ||||||||    
T  23176795 gtccccatgagctttgctcagttggtagggacaaatgcattttatatgcaggggtcggggttcgaac 23176729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 2888879 - 2888916
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2888879 ttagctcagttggtagggacaaatgtataatatatgca 2888916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 32898445 - 32898500
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaaca 234  Q
    ||||||||||||||||||||||||||||  |||||| ||||| ||  |||||||||    
T  32898445 ttagctcagttggtagggacaaatgcattttatatgtaggggccggggttcgaaca 32898500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 33933814 - 33933760
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||| |||  |||||||||||||||||||| | |||||||||||||||||||    
T  33933814 aagtccccgtgagcttagctcagttggtagggac-attgcataatatatgcagggg 33933760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 46562640 - 46562691
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||| ||| ||||||||| ||| |||||||||||| ||||||||||||    
T  46562640 aagtccccgtgagtttagctcatttgatagggacaaatgtataatatatgca 46562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 55055912 - 55055978
Alignment:
Q  166 agtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||| |||  |||||||||||||||||||| |||||||| | |||||||||| ||| ||||||||    
T  55055912 agtccccgtgagcttagctcagttggtagggac-aatgcatattttatgcaggggccgaggttcgaac 55055978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 2649789 - 2649752
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2649789 tttagctcagttggtagggac-aatgcataatatatgca 2649752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 7241921 - 7241959
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  7241921 tttagctcagttgttaggaacaaatgcataatatatgca 7241959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 8494988 - 8495029
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  8494988 tgaacttagctcagttggtagggac-aatgcataatatatgca 8495029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 45304041 - 45303991
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||  |||||||||||||||||||||| |||| || ||||||||    
T  45304041 ctcagttggtgtggacaaatgcataatatatgcaagggttgaagttcgaac 45303991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 52869065 - 52869031
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatat 213  Q
    |||||||||||||||| ||||||||||||||||||    
T  52869065 ttagctcagttggtagagacaaatgcataatatat 52869031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 3161016 - 3161057
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcat 206  Q
    |||||||| |||  ||||||||||||||||||||||||||||    
T  3161016 aagtccccgtgagcttagctcagttggtagggacaaatgcat 3161057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 20799449 - 20799413
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  20799449 ttagctcagttggtagggac-aatgcataatatatgca 20799413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 23142815 - 23142774
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    ||||||||||||||||||||||||||||  |||||| |||||    
T  23142815 ttagctcagttggtagggacaaatgcattttatatgtagggg 23142774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 46545594 - 46545557
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  46545594 ttagctcagttggtagggacaaatgtataaaatatgca 46545557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 46676565 - 46676517
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  46676565 gtccccatgagcttagctcagttggtaaggac-aatgcataatatatgca 46676517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 50362194 - 50362158
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  50362194 ttagctcagttggtagggac-aatgcataatatatgca 50362158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 7513440 - 7513400
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtc 222  Q
    |||||||||||||||||||||| ||  ||||||||||||||    
T  7513440 gctcagttggtagggacaaatgtattttatatgcaggggtc 7513400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 46206586 - 46206629
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcg 223  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||    
T  46206586 ttagctcagttggtagggac-attgcattatatatgcaggggtcg 46206629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 25884050 - 25883996
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  25884050 ttagcttagttggtagggacaaatgcataatatatgcaggggtcggggttcgaac 25883996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 46336564 - 46336510
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  46336564 ttagctcagttggtagggataaatacataatatatgcaggggtcggggttcgaac 46336510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 10828478 - 10828516
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcag 217  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  10828478 ttagctcagttggtagggacaaatgcatattatatgcag 10828516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 24120476 - 24120439
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||| |||||||||||||||||||||    
T  24120476 ttagctcagttggtagagacaaatgcataatatatgca 24120439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 44880576 - 44880613
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44880576 ctcagttggtagggacaaatgcatgatatatgcagggg 44880613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 45118634 - 45118702
Alignment:
Q  164 gaagtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||  |||||||||||||||||||| | ||||| ||||||||||||| ||  ||||||||    
T  45118634 gaagtccccatgagcttagctcagttggtagggac-attgcattatatatgcaggggccggggttcgaac 45118702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 4227806 - 4227752
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||  ||||||||    
T  4227806 tttagctcagttggtagggac-attgcataatttatgcaggggtcggggttcgaac 4227752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 15085743 - 15085692
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||| ||||||||||||||||||||  |||||||||||||||  ||||||||    
T  15085743 gctcggttggtagggacaaatgcattttatatgcaggggtcggggttcgaac 15085692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Original strand, 18554739 - 18554770
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatg 214  Q
    ||||||||||||||||||||||||||||||||    
T  18554739 ctcagttggtagggacaaatgcataatatatg 18554770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 27329991 - 27329940
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  27329991 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 27329940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 44625284 - 44625233
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  44625284 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 44625233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 51879106 - 51879157
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  51879106 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 51879157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 34102077 - 34102115
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  34102077 gctcagttggtagggacaaatgcattttatatgcagggg 34102115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 36472494 - 36472432
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacaccaaac 240  Q
    |||| ||||||||||||||||||||||||| | |||||||| ||||   ||||||| ||||||    
T  36472494 tttaactcagttggtagggacaaatgcatattgtatgcaggagtcgggattcgaactccaaac 36472432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 46767354 - 46767392
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  46767354 gctcagttggtagggacaaatgcattttatatgcagggg 46767392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16873795 - 16873828
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||| ||||||||||||||||||||    
T  16873795 ctcagttggtaggaacaaatgcataatatatgca 16873828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 18870780 - 18870744
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18870780 ttagctcagttggtagggac-aatgcataatatatgca 18870744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 22251512 - 22251479
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||| ||||||||||||||||||||||    
T  22251512 ctcagttggtatggacaaatgcataatatatgca 22251479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 35347351 - 35347314
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||| || ||||||||||||||||||||||    
T  35347351 ttagctcagttgctatggacaaatgcataatatatgca 35347314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 45096020 - 45096068
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||| |||||||||||| || |||| |||||||||||||||||    
T  45096020 gtccccatgaacttagctcagttgataaggac-aatgcataatatatgca 45096068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 45431954 - 45431990
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45431954 ttagctcagttggtagggac-aatgcataatatatgca 45431990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 49029002 - 49028965
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggg 219  Q
    |||||||||||||||||||||||||  |||||||||||    
T  49029002 gctcagttggtagggacaaatgcattttatatgcaggg 49028965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 31586945 - 31587008
Alignment:
Q  168 tccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaa 232  Q
    |||||||||  |||||||||||||||||||  | |||||| |||||||||||||||  |||||||    
T  31586945 tccccatgagcttagctcagttggtaggga-tattgcatattatatgcaggggtcggagttcgaa 31587008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 35200563 - 35200607
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcg 223  Q
    ||||||||||||||||||||||||||||  |||||| || |||||    
T  35200563 ttagctcagttggtagggacaaatgcattttatatgtagaggtcg 35200607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 49443498 - 49443431
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||| ||||||||| |||| |||||| | |||||||| |||||||||| ||  ||||||||    
T  49443498 aagtccccatgagtttagctcaattggcagggac-attgcataatttatgcaggggccggagttcgaac 49443431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 49983783 - 49983728
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggt 221  Q
    |||||||| |||| |||||||||||||||||||| | || ||||| |||||||||||    
T  49983783 aagtccccgtgaacttagctcagttggtagggac-attgtataatttatgcaggggt 49983728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 33200047 - 33200091
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcg 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  33200047 ttagctcagttggtagggacaaatgcataatatatgtaggggtcg 33200091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 3481566 - 3481603
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3481566 ttagctcagttggtagggacaaatgcataatatatgca 3481603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 2817440 - 2817394
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatg 214  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  2817440 gtccccatgaatttagctcagttggtaaggac-aatgcataatatatg 2817394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 9968495 - 9968532
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  9968495 ttagctcagttggtagggacaaatgcatattatatgca 9968532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 28393810 - 28393777
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||||||||||||||||    
T  28393810 ctcagttggtagggacaaatgcataatatatgca 28393777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 11344446 - 11344481
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatg 214  Q
    |||||| |||||||||||||||||||||||||||||    
T  11344446 ttagcttagttggtagggacaaatgcataatatatg 11344481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 11502466 - 11502501
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatg 214  Q
    |||||| |||||||||||||||||||||||||||||    
T  11502466 ttagcttagttggtagggacaaatgcataatatatg 11502501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 18512634 - 18512583
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  18512634 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 18512583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 10052533 - 10052479
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||| ||  |||||| |||||||||||||||| ||| ||||||||    
T  10052533 ttagctcagttggttggagcaaatgtataatatatgcaggggccgaggttcgaac 10052479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 13763772 - 13763810
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  13763772 gctcagttggtagggacaaatgcattttatatgcagggg 13763810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 46959795 - 46959741
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||| ||||||| |||||||||||| |||||||| |||||||  |||||||    
T  46959795 ttagctcaattggtagagacaaatgcatattatatgcaagggtcgagattcgaac 46959741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 4126892 - 4126961
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacacc 236  Q
    |||||||||| ||||||||| |||||| ||   |||||| ||||||||||| || ||||||| |||||||    
T  4126892 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgcagaggccgatgtttgaacacc 4126961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 21400078 - 21400042
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21400078 ttagctcagttggtagggac-aatgcataatatatgca 21400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 18911862 - 18911902
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtc 222  Q
    |||||||||||||||||||||| ||  ||||||||||||||    
T  18911862 gctcagttggtagggacaaatgaattttatatgcaggggtc 18911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 9307 - 9370
Alignment:
Q  166 agtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttc 229  Q
    ||||||| |||  ||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  9307 agtccccgtgagcttagctcagttggtagggacaaatgtataatatacgcaggggtcgaggttc 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 14142788 - 14142838
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  14142788 ctcagttggtagggacaaatgcatattatatgcaggggtcggggttcgaac 14142838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 14146225 - 14146275
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  14146225 ctcagttggtagggacaaatgcatattatatgcaggggtcggggttcgaac 14146275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 14583209 - 14583246
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14583209 ctcagttggtagggacaaatgcataatatatgcagggg 14583246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 4990841 - 4990779
Alignment:
Q  168 tccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcg 230  Q
    ||||| ||| |||| ||||||||||||||| |||||||||||||||| |||||| || |||||    
T  4990841 tccccgtgagtttaactcagttggtagggagaaatgcataatatatgtaggggttgaggttcg 4990779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 18412562 - 18412619
Alignment:
Q  176 aatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaaca 234  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||  |||||||||    
T  18412562 aatttagctcagttggtagggac-attgcataatttatgcaggggtcggagttcgaaca 18412619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 8999947 - 8999910
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||| |||||||||||||||||||||    
T  8999947 ttagctcagttggtagagacaaatgcataatatatgca 8999910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 42208535 - 42208488
Alignment:
Q  168 tccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  42208535 tccccgtgaatttagctcagttggtaaggac-aatgcataatatatgca 42208488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 36122523 - 36122565
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||| |||| ||| |||||||||||||||||||||||||||||    
T  36122523 tgaacttagttcaattggtagggacaaatgcataatatatgca 36122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 11708992 - 11709028
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11708992 ttagctcagttggtagggac-aatgcataatatatgca 11709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 13059238 - 13059198
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  13059238 ttagctcagttggtagggac-aatgcataatttatgcagggg 13059198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 39821890 - 39821926
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39821890 ttagctcagttggtagggac-aatgcataatatatgca 39821926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 29908018 - 29908053
Alignment:
Q  180 tagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29908018 tagctcagttggtagggac-aatgcataatatatgca 29908053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 6734805 - 6734759
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||    
T  6734805 tgaacttagctcagttggtagggacaaatgcataatatatgtagggg 6734759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 36422503 - 36422557
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||| |||||||||||||||||||||||| | | ||||||||    
T  36422503 ttagctcagttggtaggaacaaatgcataatatatgcaggggccaaggttcgaac 36422557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 3198336 - 3198389
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||  |||||||||||||||||||| || ||||||||    
T  3198336 ttagctcagttggtagggacat-tgcataatatatgcaggggttgaggttcgaac 3198389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 26902630 - 26902683
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||| |||||||||||||| |||||||||||||  ||||||||    
T  26902630 ttagctcagttggtagcgacaaatgcataat-tatgcaggggtcggggttcgaac 26902683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 5195206 - 5195153
Alignment:
Q  180 tagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||| |||||| |||||||||||| |||||| || ||||||||    
T  5195206 tagctcagttggtagagacaaacgcataatatatgtaggggttgaggttcgaac 5195153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 15715800 - 15715844
Alignment:
Q  188 ttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  15715800 ttggtagggacaa-tgcataatatatgcaggggtcgaggttcgaac 15715844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 21139204 - 21139167
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||| |||||||||||||||||||||||||||||||    
T  21139204 ttagctgagttggtagggacaaatgcataatatatgca 21139167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 28871381 - 28871333
Alignment:
Q  184 tcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaa 232  Q
    |||||||||||||||||||||||  |||||||||||||||  |||||||    
T  28871381 tcagttggtagggacaaatgcattttatatgcaggggtcggggttcgaa 28871333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 30209061 - 30209009
Alignment:
Q  181 agctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||| |||||||||||||||||||  |||||||||||||||  ||||||||    
T  30209061 agctcacttggtagggacaaatgcattttatatgcaggggtcggggttcgaac 30209009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 37054338 - 37054291
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatat 213  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  37054338 aagtcctcatgagtttagctcagttggtagggac-aatgcataatatat 37054291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 4067978 - 4068044
Alignment:
Q  166 agtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||| |||  |||||||||||||||||||| |||||||| | |||||||||| ||| ||||||||    
T  4067978 agtccccgtgagcttagctcagttggtagggac-aatgcatattttatgcagggggcgaggttcgaac 4068044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 17891918 - 17891867
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  17891918 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 17891867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 23937992 - 23937941
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  23937992 gctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 23937941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 3740966 - 3741016
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||||| ||  |||||||||||||||  ||||||||    
T  3740966 ctcagttggtagggacaaatgtattttatatgcaggggtcggggttcgaac 3741016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3821480 - 3821442
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  3821480 gctcagttggtagggacaaatgcattttatatgcagggg 3821442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 17861984 - 17862021
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  17861984 tttagctcagttggtagggac-aatgcataatatatgca 17862021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 18928729 - 18928782
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||| |  |||||||| ||||||||||||| |||||||||    
T  18928729 ttagctcagttggtagggatat-tgcataatttatgcaggggtcggtgttcgaac 18928782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 36068808 - 36068770
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  36068808 gctcagttggtagggacaaatgcattttatatgcagggg 36068770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 5485192 - 5485228
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5485192 ttagctcagttggtagggac-aatgcataatatatgca 5485228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 6489013 - 6489049
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  6489013 ttagctcagttggtagggac-aatgcataatatatgca 6489049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 15889417 - 15889453
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15889417 ttagctcagttggtagggac-aatgcataatatatgca 15889453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 34436857 - 34436893
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  34436857 ttagctcagttggtagggac-aatgcataatatatgca 34436893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 39800091 - 39800051
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  39800091 ttagctcagttggtagggac-aatgcataatttatgcagggg 39800051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 20224108 - 20224156
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgcaggggtc 222  Q
    ||||||||  |||| ||||||  ||||||||||||||||||||||||||    
T  20224108 tgaatttaattcagatggtagaaacaaatgcataatatatgcaggggtc 20224156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 10463259 - 10463205
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||  ||||||||    
T  10463259 ttagctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaac 10463205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 23405205 - 23405258
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||    
T  23405205 ttagctcagttggtagggacat-tgcataatatatgcaggggtcggggttcgaac 23405258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 5947877 - 5947928
Alignment:
Q  182 gctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||| ||||||||||||||||||||  |||||||||||||||  ||||||||    
T  5947877 gctcggttggtagggacaaatgcattttatatgcaggggtcggggttcgaac 5947928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 7717676 - 7717613
Alignment:
Q  170 cccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    |||||||  |||| |||||||||||||||||||| ||  |||||||||||||||  ||||||||    
T  7717676 cccatgagcttagttcagttggtagggacaaatgtattttatatgcaggggtcggggttcgaac 7717613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 37600103 - 37600146
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtc 222  Q
    ||||||||||||||||||||||||| ||||||||| || |||||    
T  37600103 ttagctcagttggtagggacaaatgtataatatatacatgggtc 37600146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 3169784 - 3169742
Alignment:
Q  171 ccatgaatttagctcagttggtagggacaaatgcataatatat 213  Q
    |||||| |||| |||||||||||||||||||| ||||||||||    
T  3169784 ccatgagtttaactcagttggtagggacaaatacataatatat 3169742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 3197135 - 3197098
Alignment:
Q  178 tttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3197135 tttagctcagttggtagggac-aatgcataatatatgca 3197098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 24592906 - 24592865
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  24592906 tgaacttagctcagttggtagggac-aatgcataatatatgca 24592865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 10065463 - 10065515
Alignment:
Q  163 agaagtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||| |||| |||||| |||||||| |||||| |||||||||||||||    
T  10065463 agaagtccccgtgaacttagctaagttggtaaggacaa-tgcataatatatgca 10065515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 12124539 - 12124587
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||| ||| |||||||||||||||| |||| |||||||||||||||||    
T  12124539 gtccccgtgagtttagctcagttggtaaggac-aatgcataatatatgca 12124587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 20565130 - 20565094
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  20565130 ttagctcagttggtagggac-aatgcataatatatgca 20565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 23919538 - 23919486
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaa 232  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||  |||||||    
T  23919538 ttagctcagttggtagggac-attgcataatatatggaggggtcggggttcgaa 23919486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 23984285 - 23984244
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcagggg 220  Q
    |||||||| |||||||||||||||||||  ||||||||||||    
T  23984285 ttagctcaattggtagggacaaatgcattttatatgcagggg 23984244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 28442090 - 28442057
Alignment:
Q  183 ctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||| ||||||||||||||||||||||    
T  28442090 ctcagttggtatggacaaatgcataatatatgca 28442057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 31963133 - 31963085
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    |||||||||| | |||||||||||||| |||| |||||||||||||||||    
T  31963133 gtccccatgagtatagctcagttggtaaggac-aatgcataatatatgca 31963085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 40099450 - 40099402
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgca 216  Q
    ||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  40099450 gtccccatgagcttagctcagttggtaaggac-aatgcataatatatgca 40099402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 4927509 - 4927470
Alignment:
Q  174 tgaatttagctcagttggtagggacaaatgcataatatatg 214  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  4927509 tgaacttagctcagttggtagggacaaa-gcataatatatg 4927470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 30089041 - 30089088
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatat 213  Q
    |||||| | |||| |||||||||||||||||||| ||||||||||||||    
T  30089041 aagtcctcgtgaacttagctcagttggtagggac-aatgcataatatat 30089088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 30125645 - 30125692
Alignment:
Q  165 aagtccccatgaatttagctcagttggtagggacaaatgcataatatat 213  Q
    |||||| | |||| |||||||||||||||||||| ||||||||||||||    
T  30125645 aagtcctcgtgaacttagctcagttggtagggac-aatgcataatatat 30125692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 132256 - 132320
Alignment:
Q  167 gtccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaa 232  Q
    |||||| ||||||||||||| ||| |||||| |||||||||||||||||||| ||||  |||||||    
T  132256 gtccccgtgaatttagctcaattgataggga-aaatgcataatatatgcaggtgtcggggttcgaa 132320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 15014 - 15074
Alignment:
Q  179 ttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaacaccaaac 240  Q
    |||||||||||||||||||| | |||||||| ||||||||||||   |||||||| ||||||    
T  15014 ttagctcagttggtagggac-attgcataatttatgcaggggtcatggttcgaaccccaaac 15074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 315647 - 315711
Alignment:
Q  168 tccccatgaatttagctcagttggtagggacaaatgcataatatatgcaggggtcgatgttcgaac 233  Q
    ||||| |||| ||||||||||||||| ||| |  |||||  |||||||||||||||||||||||||    
T  315647 tccccgtgaacttagctcagttggtaaggatat-tgcattttatatgcaggggtcgatgttcgaac 315711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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