View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_31 (Length: 425)
Name: NF6867A_low_31
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_31 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0094 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Complemental strand, 31242399 - 31241994
Alignment:
| Q |
21 |
aaaataattaacaagcatgccatacagatctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242399 |
aaaataattaacaagcatgccatacagatctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatt |
31242300 |
T |
|
| Q |
121 |
tgtattgcatgtctaagatatgnnnnnnnn-ggtatttcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaaca |
219 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242299 |
tgtattgcatgcctaagatatgtttttttttggtatttcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaaca |
31242200 |
T |
|
| Q |
220 |
agatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatcctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242199 |
agatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatcctt |
31242100 |
T |
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| Q |
320 |
gatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242099 |
gatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacg |
31242000 |
T |
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| Q |
420 |
ccttga |
425 |
Q |
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|||||| |
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| T |
31241999 |
ccttga |
31241994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 418
Target Start/End: Original strand, 10781 - 11164
Alignment:
| Q |
48 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||| ||| | |
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| T |
10781 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatatattctgataaagaaaagctatattgcatgcctataataagttatt |
10880 |
T |
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| Q |
148 |
nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatctt |
238 |
Q |
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|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
10881 |
t--ggaatttctatgttatcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttctacctcatctt |
10978 |
T |
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| Q |
239 |
aatcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
338 |
Q |
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|||||||| |||||| ||| |||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
10979 |
aatcagcaaaaatcaacgtagtaagtaattatgcaattatattctttctattctcccttgacattaacttttccaatccttgatagaatcgtgaacttta |
11078 |
T |
|
| Q |
339 |
attatctcgtgttcttaatctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttac |
418 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
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| T |
11079 |
attctctcgtgttcttaatctttacttaagaatgcatctttgttctcaatcatagtgtctaacacgcccattgcaagtaatcttac |
11164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 418
Target Start/End: Complemental strand, 8908 - 8795
Alignment:
| Q |
311 |
ccaatccttgatagaatcatgaactttaattatctcgtgttcttaatctta------gaatgcatctttgttctcgatcatagtgtctaacacacccatt |
404 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8908 |
ccaatccttgatagaatcgtgaactttaattatcttgtgttcttaatctttacttaggaatgcatctttgttctcgatcatagtgtctaacacgcccatt |
8809 |
T |
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| Q |
405 |
gcaactaatcttac |
418 |
Q |
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|||||||||||||| |
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| T |
8808 |
gcaactaatcttac |
8795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 9099 - 8913
Alignment:
| Q |
48 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
147 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||| |||||||||||| | ||||||||| ||| ||| | |
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| T |
9099 |
atctaactaaacaagcatatcatagcagaaattttgattgtttaaaatatgatatattgtgataaagaaaagctatattgcatgcctataataagttatt |
9000 |
T |
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| Q |
148 |
nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttc |
227 |
Q |
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| T |
8999 |
ta--gaatttctatgttgttaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttc |
8913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 48 - 418
Target Start/End: Original strand, 17216101 - 17216483
Alignment:
| Q |
48 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
147 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| | ||||| ||||||| |||| | |
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| T |
17216101 |
atctaactaaacaaggacatcgtagcagaaattttgattgttcaaaacatgatatattctgataaagaaaagctatattgtatgtctatgataagttatt |
17216200 |
T |
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| Q |
148 |
nnnggtattt-------caattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaa |
240 |
Q |
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| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
17216201 |
tggaatttttatgttgtcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcc--acaagatcttctacctcgtcttaa |
17216298 |
T |
|
| Q |
241 |
tcagcaggaatcaatacagtgagtaattatgcaatccttttcttt-ccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaa |
339 |
Q |
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|||||| ||||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17216299 |
tcagcaaaaatcaatgcagtaagtaattatgcaattatattcttttccattctcccttggcattaacttttccaatccttgatagaatcgtgaactttag |
17216398 |
T |
|
| Q |
340 |
ttatctcgtgttcttaatctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttac |
418 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17216399 |
ttatctcgtgctcttaatctttacttaagaatgcatctttgttctcgatcatagtgtctaacacgcccattgcaactaatcttac |
17216483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 157 - 418
Target Start/End: Complemental strand, 17214358 - 17214091
Alignment:
| Q |
157 |
tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata |
256 |
Q |
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||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
17214358 |
tcaattaatattctcacaactttgtttaattgcacaatgacaacaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaagaatcaacg |
17214259 |
T |
|
| Q |
257 |
cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaa |
356 |
Q |
| |
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|||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
17214258 |
cagtaagtaattattcaattgtattctttccattctcccttggcattaacttttccaatccttaatagaattgtgaactttaattatctcgtgttcttaa |
17214159 |
T |
|
| Q |
357 |
tctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttac |
418 |
Q |
| |
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|||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
17214158 |
tctttacttaagaatgcatctttgttctcgataatattgtctaacacgcccattgcaactaatcttac |
17214091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 17214400 - 17214367
Alignment:
| Q |
48 |
atctaactaaacaaggacatcatagcagaaattt |
81 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
17214400 |
atctaactaaacaaggacatcatagcagaaattt |
17214367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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