View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_312 (Length: 244)
Name: NF6867A_low_312
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_312 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 32064566 - 32064799
Alignment:
| Q |
5 |
agtttggtgttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcatttg |
104 |
Q |
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| T |
32064566 |
agtttggttttggaacctaaaggtttggctttatattataggagtacaaattctcctaggccaagtaaatattggttttcttcttcttggttttcatttg |
32064665 |
T |
|
| Q |
105 |
aaaaaggctcattagaaaatgtcacactaaaatctgatccagaatcttttgagtttggatttgatttttctgttaccaattctaccacttctggcaatag |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32064666 |
aaaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttgattttcatgttaccaattctaccacttctggcaatag |
32064765 |
T |
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| Q |
205 |
tatcattggtaggccagtgaataatagtacctta |
238 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32064766 |
tatcattggtaggccagtgaataatagtacctta |
32064799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 32031431 - 32031664
Alignment:
| Q |
5 |
agtttggtgttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcatttg |
104 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32031431 |
agtttggttttggagcctaaaggtttggctttatattataagagtacaaattctcctaggccaattaaatattggttttcatcttcttggttttcatttg |
32031530 |
T |
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| Q |
105 |
aaaaaggctcattagaaaatgtcacactaaaatctgatccagaatcttttgagtttggatttgatttttctgttaccaattctaccacttctggcaatag |
204 |
Q |
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| T |
32031531 |
aaaaaggttcattagaaaatgtcacactaaaatctgatccagaatcttttgagtatggatttgatttttttgttgccaattctaccacttctggtagtag |
32031630 |
T |
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| Q |
205 |
tatcattggtaggccagtgaataatagtacctta |
238 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32031631 |
tatcattggtaggccagtgaataatagtacctta |
32031664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 32071898 - 32072127
Alignment:
| Q |
5 |
agtttggtgttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcatttg |
104 |
Q |
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|||||| | ||||||||||||||||||| ||| |||||||||||| ||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32071898 |
agtttgattttggagcctaaaggtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttg |
32071997 |
T |
|
| Q |
105 |
aaaaaggctcattagaaaatgtcacactaaaatctgatccagaatcttttgagtttggatttgatttttctgttaccaattctaccacttctggcaatag |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| |
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| T |
32071998 |
aaaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttgatttttttgttgccaattctaccacttctggtagtag |
32072097 |
T |
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| Q |
205 |
tatcattggtaggccagtgaataatagtac |
234 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
32072098 |
tatcattggtaggccagtgaagaatagtac |
32072127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 32078423 - 32078524
Alignment:
| Q |
5 |
agtttggtgttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcatttg |
104 |
Q |
| |
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|||||||| || || |||||||| ||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||||| ||||| |||||||| |
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| T |
32078423 |
agtttggttttcgatcctaaagggttgactttatattacaagagtaaaaattcacctaggccaattccctattggaattcatctaattggtattcatttg |
32078522 |
T |
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| Q |
105 |
aa |
106 |
Q |
| |
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|| |
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| T |
32078523 |
aa |
32078524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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