View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_321 (Length: 243)
Name: NF6867A_low_321
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_321 |
 | |
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| [»] scaffold0764 (1 HSPs) |
| | |
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| [»] scaffold0313 (2 HSPs) |
| | |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1976581 - 1976353
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
100 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1976581 |
atctaaatatggaagatcctagcacagatttgcatgtgtaccaagatgcacaacctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
1976482 |
T |
|
| Q |
101 |
tcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1976481 |
tcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
1976382 |
T |
|
| Q |
201 |
caagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1976381 |
caagcatcaggatcacttccctctgatga |
1976353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1983947 - 1983719
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
100 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1983947 |
atctaaatatggaagatcctagcacagatttgcatgtgtaccaagatgcacaacctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
1983848 |
T |
|
| Q |
101 |
tcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
200 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1983847 |
tcaagaaattcctgcaatcatagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
1983748 |
T |
|
| Q |
201 |
caagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
1983747 |
caagcatcaggatcacttccctctgatga |
1983719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20956368 - 20956602
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattca |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
20956368 |
atctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattca |
20956467 |
T |
|
| Q |
95 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20956468 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
20956567 |
T |
|
| Q |
195 |
attcctcaagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
20956568 |
attcctcaagcatcaggatcacttccctctgatga |
20956602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27161820 - 27161586
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattca |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
27161820 |
atctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattca |
27161721 |
T |
|
| Q |
95 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27161720 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
27161621 |
T |
|
| Q |
195 |
attcctcaagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27161620 |
attcctcaagcatcaggatcacttccctctgatga |
27161586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 23720136 - 23720352
Alignment:
| Q |
15 |
gatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaa |
108 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| |
|
|
| T |
23720136 |
gatccaagctcagatttaaatgtgtaccaagatgcacagcctgaaaacaatgaggatgtgcttcaggaagatcgtgaaatgattcagaaacttcaagaaa |
23720235 |
T |
|
| Q |
109 |
atcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcctcaagcatc |
208 |
Q |
| |
|
|||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||| || |||||||||||||| |
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|
| T |
23720236 |
atcctgcaatcatagttcataatgctcagaaaaatgcaactgctgaacctagcttgcctcaggagaatgaaatgtcagttgaccccattcctcaagcatc |
23720335 |
T |
|
| Q |
209 |
aggatcacttccctctg |
225 |
Q |
| |
|
|||||| || ||||||| |
|
|
| T |
23720336 |
aggatctctgccctctg |
23720352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22910613 - 22910498
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagt------gcaagctcatgaaatgattca |
94 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||| |||||||||||||| |||||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
22910613 |
atctaaatgtggaggatccaagctcatatttgaatgtgtaccaagatgcacaacctgaaaacaatgaggaagtgtttcaggaagctcattaaatgattca |
22910514 |
T |
|
| Q |
95 |
ggaacttcaagaaaat |
110 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22910513 |
ggaacttcaagaaaat |
22910498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 22910507 - 22910449
Alignment:
| Q |
167 |
tcaagagaatgagatgtcagctgatcctattcctcaagcatcaggatcacttccctctg |
225 |
Q |
| |
|
|||||| ||||| ||||||| ||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
22910507 |
tcaagaaaatgaaatgtcagttgaccccattcctcaagcatcaggatctctgccctctg |
22910449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2702 - 2468
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattca |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
2702 |
atctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattca |
2603 |
T |
|
| Q |
95 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2602 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcct |
2503 |
T |
|
| Q |
195 |
attcctcaagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2502 |
attcctcaagcatcaggatcacttccctctgatga |
2468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3910 - 4144
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattca |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
3910 |
atctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattca |
4009 |
T |
|
| Q |
95 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4010 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcct |
4109 |
T |
|
| Q |
195 |
attcctcaagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4110 |
attcctcaagcatcaggatcacttccctctgatga |
4144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 18067 - 18301
Alignment:
| Q |
1 |
atctaaatgtggaagatccaagcacagatttgaatgtataccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattca |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
18067 |
atctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattca |
18166 |
T |
|
| Q |
95 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagccaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18167 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcct |
18266 |
T |
|
| Q |
195 |
attcctcaagcatcaggatcacttccctctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18267 |
attcctcaagcatcaggatcacttccctctgatga |
18301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 42404 - 42355
Alignment:
| Q |
87 |
atgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttca |
136 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
42404 |
atgattcaggatattcaagaaaatcctgaaatcatagttcagaatgttca |
42355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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