View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_328 (Length: 242)
Name: NF6867A_low_328
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_328 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 18219349 - 18219130
Alignment:
| Q |
4 |
agaaccatagatgtcagaatcattaacaccaccagcgttattgctaggaccaacatcattgacagaaagcattggacaagagacaagggaggaagagaaa |
103 |
Q |
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| T |
18219349 |
agaaccacaaatgtcagaatcattaacaccaccagtgttattgcttggaccaacatcattgacagaaaacattgga---------------gaagagaaa |
18219265 |
T |
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| Q |
104 |
ggtaataatgtcnnnnnnncaaaatcagaagacacacaaatggtagtaggaagcagagcagcaaaggacaaagcagcagagatagaaaggctgaaaagtg |
203 |
Q |
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| T |
18219264 |
ggtaataatgtcaaaaaaacaaaatcagcagacacacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggctgaaaagtg |
18219165 |
T |
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| Q |
204 |
gtttccaaatttgcaaaccaagagggacctttatg |
238 |
Q |
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| T |
18219164 |
gtttccaaatttgcaaaccaagagggacctttatg |
18219130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 43011226 - 43011096
Alignment:
| Q |
31 |
accaccagcgttattgctaggaccaacatcattgacagaaagcattggacaagagacaagggaggaagagaaaggtaataatgtcnnnnnnncaaaatca |
130 |
Q |
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| T |
43011226 |
accaccagcgtcattgcttggaccaacatcattgacagaaaacattggacatgagacaagggaggaagagaaaggtactaacgtgaacaaaacaaaatca |
43011127 |
T |
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| Q |
131 |
gaagacacacaaatggtagtaggaagcagag |
161 |
Q |
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| T |
43011126 |
gcagacacacaaatggtagtaggaagcagag |
43011096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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