View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_329 (Length: 242)
Name: NF6867A_low_329
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_329 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 38830868 - 38830653
Alignment:
| Q |
11 |
gctagctttatatttagtcttaacagtgttttgaatgcaaaagaactcacgtgtatactgtaagcaagagagaggtttatctcataaccgtattgttgga |
110 |
Q |
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| T |
38830868 |
gctatctttatatttagtcttaacaagtttttgaatgcaaaagaactcacgggtatactgtaagcaagagagagatatatctcataacc---ttgttgga |
38830772 |
T |
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| Q |
111 |
ataactatttttggtagnnnnnnngtt--gttgtaaattaagctatttttagaataactccttacaattttaaagagttaatcactctcaacatatatta |
208 |
Q |
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| T |
38830771 |
ataactatttttggtagttttttttttttgttgtaaattaagctatttttagaataactccttacaattttaaagagttaatcactctcaacatatatta |
38830672 |
T |
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| Q |
209 |
tacaattttgaaaatagat |
227 |
Q |
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| T |
38830671 |
tacaattttgaaaatagat |
38830653 |
T |
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