View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_334 (Length: 241)
Name: NF6867A_low_334
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_334 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 41311027 - 41311243
Alignment:
| Q |
25 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
124 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
|
| Q |
125 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
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| Q |
225 |
catcagacaatgaatag |
241 |
Q |
| |
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| ||| |||||||||| |
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| T |
41311227 |
aaccagccaatgaatag |
41311243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 43164710 - 43164921
Alignment:
| Q |
30 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
129 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
130 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcatacatca |
229 |
Q |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
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| Q |
230 |
gacaatgaatag |
241 |
Q |
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| |||||||||| |
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| T |
43164910 |
gccaatgaatag |
43164921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 30165883 - 30165684
Alignment:
| Q |
30 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
129 |
Q |
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|||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
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| Q |
130 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcatacatca |
229 |
Q |
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||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||| | || |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 30124981 - 30125160
Alignment:
| Q |
25 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
124 |
Q |
| |
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|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
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| Q |
125 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
204 |
Q |
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||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatcc |
30125160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 28180965 - 28181038
Alignment:
| Q |
128 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataaca |
201 |
Q |
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|||| ||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataaca |
28181038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 30131068 - 30131114
Alignment:
| Q |
158 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
204 |
Q |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcc |
30131114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 30120068 - 30120112
Alignment:
| Q |
158 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacat |
202 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacat |
30120112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
27 |
tgtgtattcttgcatcacccatatcttaagtgta |
60 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
| Q |
143 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
204 |
Q |
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||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc |
21426642 |
T |
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