View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_339 (Length: 241)
Name: NF6867A_low_339
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_339 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 42313140 - 42312918
Alignment:
| Q |
19 |
ctaatatagcaaaagaaatgcatgttggtcacctgaggtcaaccattattggggatacaattgcacggatgcttgaattttgtcagccggaatgtctcat |
118 |
Q |
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| T |
42313140 |
ctaatatagcaaaagaaatgcatgttggtcacctgaggtcaaccattattggggacacaattgcacggatgcttgaattttgtcagccggaatgtctcat |
42313041 |
T |
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| Q |
119 |
ccgccgaaatcatatcggtgactggggcactcaggtagatttaatctctaaagtaaactatccttttagggttaagataatgctggatccacccatgtta |
218 |
Q |
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| T |
42313040 |
ccgccgaaatcatatcggtgactggggcactcaggtagatttaatctctaaagtaaactatccttttagggttaagataatgctggatccacccatgtta |
42312941 |
T |
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| Q |
219 |
aaatttggggcctaactcatcat |
241 |
Q |
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|||||||||||||||| |||||| |
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| T |
42312940 |
aaatttggggcctaacccatcat |
42312918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 47977754 - 47977596
Alignment:
| Q |
21 |
aatatagcaaaagaaatgcatgttggtcacctgaggtcaaccattattggggatacaattgcacggatgcttgaattttgtcagccggaatgtctcatcc |
120 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||| ||||| |||||||| |||| |
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| T |
47977754 |
aatatagccaaagaaatgcatgttggtcacctgaggtcaaccattattggggacacactggcacgaatgcttgaattttgccagcctgaatgtctgatcc |
47977655 |
T |
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| Q |
121 |
gccgaaatcatatcggtgactggggcactcaggtagatttaatctctaaagtaaactat |
179 |
Q |
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| T |
47977654 |
gccgaaatcatatcggtgactggggtactcaggtagatttaatctctgaagtaaactat |
47977596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 46098595 - 46098567
Alignment:
| Q |
211 |
ccatgttaaaatttggggcctaactcatc |
239 |
Q |
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| T |
46098595 |
ccatgttaaaatttggggcctaactcatc |
46098567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 51565098 - 51565256
Alignment:
| Q |
21 |
aatatagcaaaagaaatgcatgttggtcacctgaggtcaaccattattggggatacaattgcacggatgcttgaattttgtcagccggaatgtctcatcc |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| |||||||||||||| ||||| |||||| | |||| |
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| T |
51565098 |
aatatagcaaaagaaatgcatgttggtcacctcaggtcaaccattatcggggacacacttgcacgaatgcttgaattttgccagcctgaatgtttgatcc |
51565197 |
T |
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| Q |
121 |
gccgaaatcatatcggtgactggggcactcaggtagatttaatctctaaagtaaactat |
179 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
51565198 |
gcagaaatcatatcggtgactggggcactcaggttgatttaatctctaaagtatactat |
51565256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 34028894 - 34028974
Alignment:
| Q |
19 |
ctaatatagcaaaagaaatgcatgttggtcacctgaggtcaaccattattggggatacaattgcacggatgcttgaatttt |
99 |
Q |
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| T |
34028894 |
ctaatatagcaaaggaaatgcatgttggtcaccttagatctaccataattggagacacattagcccgcatgcttgaatttt |
34028974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 29695531 - 29695559
Alignment:
| Q |
211 |
ccatgttaaaatttggggcctaactcatc |
239 |
Q |
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| T |
29695531 |
ccatgttaaaatttggggcctaactcatc |
29695559 |
T |
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