View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_35 (Length: 418)
Name: NF6867A_low_35
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 113 - 287
Target Start/End: Original strand, 10922533 - 10922706
Alignment:
| Q |
113 |
ttatcaaagtatacgtatgctggcgtgcaagaaaagctttacaaggattcaaacaaaaccatagattgagatatgccggcannnnnnncctcgttaaatc |
212 |
Q |
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| T |
10922533 |
ttatcaaagtattcgtatgccggcgtgcaagaaaagctttacaaggattcaaacaaaactatagattgagatatgcgggcatttttt-cctcgttaaatc |
10922631 |
T |
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| Q |
213 |
aaagccggccacgttcattgcagtgatcgtaagatgaatgtcttattataagtgttttctatgtgttaatgttat |
287 |
Q |
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| T |
10922632 |
aaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat |
10922706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 10935174 - 10935295
Alignment:
| Q |
284 |
ttataacattttaaagattacatatgcttctacaaatatttccttcatgtctaaatcacct-aaacaaaacactagcatattttctacaatgggagctat |
382 |
Q |
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| T |
10935174 |
ttataacattttaaagattacatatgcttctacaaatatttccttcatgtctaaatcacctaaaacaaaacactagcatcttttctacaatgggagctat |
10935273 |
T |
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| Q |
383 |
tccaactttctctctaatgata |
404 |
Q |
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| T |
10935274 |
tccaactttctctttaatgata |
10935295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 10959734 - 10959778
Alignment:
| Q |
303 |
acatatgcttctacaaatatttccttcatgtctaaatcacctaaa |
347 |
Q |
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| T |
10959734 |
acatatgcttctacaagtctttcctacatgtataaatcacctaaa |
10959778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 45407596 - 45407654
Alignment:
| Q |
210 |
atcaaagccggccacgttcattgcagtgatcgtaagatgaatgtcttattataagtgtt |
268 |
Q |
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| T |
45407596 |
atcaaagccggccatgttcattgcagtaatcgtaacatgaatgtcttattataagtgtt |
45407654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 45407426 - 45407468
Alignment:
| Q |
38 |
aatattttgagatgaatcttggatggaaatgattttctaccaa |
80 |
Q |
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| T |
45407426 |
aatattttgagatgaatctttaatggaaatgattttctaccaa |
45407468 |
T |
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