View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_352 (Length: 238)
Name: NF6867A_low_352
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_352 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 31045049 - 31045256
Alignment:
| Q |
12 |
atgaactataagcaaagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctc |
111 |
Q |
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| T |
31045049 |
atgaactataagcaaagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgcta |
31045148 |
T |
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| Q |
112 |
ttctcctaaagcctcaccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaa |
211 |
Q |
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| T |
31045149 |
ttctcctaaagcctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaa |
31045248 |
T |
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| Q |
212 |
actcatgc |
219 |
Q |
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|||||||| |
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| T |
31045249 |
actcatgc |
31045256 |
T |
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Back To:
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Target: scaffold0018 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 172338 - 172117
Alignment:
| Q |
12 |
atgaactataagcaaagagctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaa |
103 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||| || | | | || | || ||||||| |
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| T |
172338 |
atgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaa |
172239 |
T |
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| Q |
104 |
a-gttgctcttctcctaaagcctcaccaaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaatta |
196 |
Q |
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| T |
172238 |
atgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaatta |
172139 |
T |
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| Q |
197 |
agattcaaaatttaaactcatgc |
219 |
Q |
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| T |
172138 |
ag-ttcaaaattcaatctcatgc |
172117 |
T |
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