View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_362 (Length: 235)

Name: NF6867A_low_362
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_362
NF6867A_low_362
[»] chr6 (6 HSPs)
chr6 (13-125)||(22246001-22246115)
chr6 (5-91)||(14794074-14794164)
chr6 (176-235)||(22246167-22246226)
chr6 (5-110)||(15536759-15536866)
chr6 (176-235)||(15536941-15537001)
chr6 (176-235)||(14794256-14794316)
[»] chr4 (2 HSPs)
chr4 (5-114)||(648878-648989)
chr4 (176-235)||(648759-648818)
[»] chr7 (5 HSPs)
chr7 (5-114)||(17864768-17864878)
chr7 (5-67)||(42780861-42780923)
chr7 (176-234)||(42780683-42780742)
chr7 (5-61)||(18972126-18972182)
chr7 (176-235)||(17864649-17864709)
[»] chr5 (2 HSPs)
chr5 (5-114)||(15533898-15534012)
chr5 (176-235)||(15533776-15533836)
[»] chr1 (3 HSPs)
chr1 (5-114)||(13494972-13495082)
chr1 (5-66)||(21912650-21912711)
chr1 (5-49)||(1935452-1935496)
[»] scaffold0615 (1 HSPs)
scaffold0615 (5-112)||(3660-3769)
[»] chr3 (2 HSPs)
chr3 (5-91)||(36531976-36532066)
chr3 (176-218)||(46731717-46731760)
[»] scaffold0063 (2 HSPs)
scaffold0063 (5-67)||(8663-8725)
scaffold0063 (176-235)||(8488-8547)
[»] scaffold0049 (1 HSPs)
scaffold0049 (6-60)||(40282-40335)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 22246001 - 22246115
Alignment:
Q  13 gttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaagatgaatcactttgtgct--aaaaaaaaggatataagcatgataaaa 110  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  22246001 gttgcttttggaactagcaacactttaagtttggggtaggggtactagacaaagaagaatcactttgtgctcaaaaaaaaaggatataagcatgataaaa 22246100  T
Q  111 tatggtgatcatttg 125  Q
    |||||||||||||||    
T  22246101 tatggtgatcatttg 22246115  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 14794074 - 14794164
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga----tgaatcactttgtgctaaaaaaaa 91  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||     |||||||||||||||||||||||    
T  14794074 agtttggggttgcttttggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaa 14794164  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 22246167 - 22246226
Alignment:
Q  176 gtgatcagtttttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  22246167 gtgatcagtttttcattcattaaaagttctctctagtccccggttttaattgtgatatga 22246226  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 15536759 - 15536866
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactag-----aaaaagatgaatcactttgtgctaaaaaaaaggatataa 99  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||| ||||||||||      ||||||   ||||||||||||||||||||   ||||||    
T  15536759 agtttggggttgcttttggaactagaaacactctaaatttggggtaggggtactagggaaagaaaagagatatcactttgtgctaaaaaaa---atataa 15536855  T
Q  100 gcatgataaaa 110  Q
    |||||||||||    
T  15536856 gcatgataaaa 15536866  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 15536941 - 15537001
Alignment:
Q  176 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  15536941 gtgatcagttgtttcattcattaaaagttctctctagtccccgattttaattgtgatatga 15537001  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 14794256 - 14794316
Alignment:
Q  176 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||| ||| |||| ||||||||    
T  14794256 gtgatcagttgtttcattcaataaaagttatctctagtccccgattttaattttgatatga 14794316  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 648989 - 648878
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga----tgaatcactttgtgctaaaaaaaaggatataag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||     |||||||||||||||||||||||  |||||||    
T  648989 agtttggggttgcttttggaactagaaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaa--atataag 648892  T
Q  101 catgataaaatatg 114  Q
    ||||||||||||||    
T  648891 catgataaaatatg 648878  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 648818 - 648759
Alignment:
Q  176 gtgatcagtttttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    ||||||| | ||||| ||| |||||||| ||||||||||||||||| || ||||||||||    
T  648818 gtgatcattgtttcattcaataaaagttatctctagtccccggttttaagtgtgatatga 648759  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 17864878 - 17864768
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga----tgaatcactttgtgctaaaaaaaaggatataag 100  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||     ||||||||||||||||||||||   |||||||    
T  17864878 agtttggggttgcttttggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaa---atataag 17864782  T
Q  101 catgataaaatatg 114  Q
    ||||||||||||||    
T  17864781 catgataaaatatg 17864768  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 42780923 - 42780861
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga 67  Q
    ||||||| ||||||||||||||||| |||| | |||||||||||| ||||||||||| |||||    
T  42780923 agtttggggttgcttttggaactagcaacattctaagtttggggtaggggtactagagaaaga 42780861  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 42780742 - 42780683
Alignment:
Q  176 gtgatcagtttttcaa-tcattaaaagttctctctagtccccggtttaaattgtgatatg 234  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||| || ||||||||||||    
T  42780742 gtgatcagttattcaagtcattaatagttctctctagtccccggattcaattgtgatatg 42780683  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 18972182 - 18972126
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactaga 61  Q
    ||||||| ||||||  ||||||||| |||||| |||||||||||| |||||||||||    
T  18972182 agtttggggttgctcctggaactagcaacactctaagtttggggtaggggtactaga 18972126  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 17864709 - 17864649
Alignment:
Q  176 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    |||||||||| ||||| ||| ||||| |  ||||||||||||||||| |||||||||||||    
T  17864709 gtgatcagttgtttcattcaataaaaataatctctagtccccggttttaattgtgatatga 17864649  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 15534012 - 15533898
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga----tgaatcactttgtgct-aaaaaaaaggatataa 99  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||     ||||||||||||||| ||||||||  ||||||    
T  15534012 agtttggggttgcttttggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaaaatatataa 15533913  T
Q  100 gcatgataaaatatg 114  Q
    |||||||||||||||    
T  15533912 gcatgataaaatatg 15533898  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 15533836 - 15533776
Alignment:
Q  176 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||||||| |||||||||||||    
T  15533836 gtgatcagttgtttcattcaataaaagttatctctagtccccggttttaattgtgatatga 15533776  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 13494972 - 13495082
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga----tgaatcactttgtgctaaaaaaaaggatataag 100  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||     ||||||||||||||||||||||   |||||||    
T  13494972 agtttggggttgcttctggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaa---atataag 13495068  T
Q  101 catgataaaatatg 114  Q
    ||||||||||||||    
T  13495069 catgataaaatatg 13495082  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 21912711 - 21912650
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaag 66  Q
    ||||||| |||||| |||||||||| |||||| |||||||||||| ||||||||||| ||||    
T  21912711 agtttggggttgctcttggaactagcaacactctaagtttggggtaggggtactagagaaag 21912650  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1935452 - 1935496
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggt 49  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||    
T  1935452 agtttggggttgcttttggaactagcaacactctaagtttggggt 1935496  T

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Target: scaffold0615 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 3660 - 3769
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaagat----gaatcactttgtgctaaaaaaaaggatataag 100  Q
    ||||||| ||||||||||||||||| |||||||||||| |   || ||||||||||| |||||     |||||||||||||||||||||||  |||||||    
T  3660 agtttggggttgcttttggaactagcaacactttaagtctcaagtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaa--atataag 3757  T
Q  101 catgataaaata 112  Q
    ||||||||||||    
T  3758 catgataaaata 3769  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 36531976 - 36532066
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaagatga----atcactttgtgctaaaaaaaa 91  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||  |    |||||||||||||||||||||    
T  36531976 agtttggggttgcttttggaactagcaacactttaagtttggggtaggggcactagagaaagagaagaaaatcactttgtgctaaaaaaaa 36532066  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 46731760 - 46731717
Alignment:
Q  176 gtgatcagtt-tttcaatcattaaaagttctctctagtccccgg 218  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  46731760 gtgatcagttgtttcattcattaaaagttctctctagtccccgg 46731717  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 8725 - 8663
Alignment:
Q  5 agtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactagaaaaaga 67  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| ||||| |||||    
T  8725 agtttggggttgcttttggaactagcaacacttcaagtttggggtaggggttctagagaaaga 8663  T

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Target: scaffold0063; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 8547 - 8488
Alignment:
Q  176 gtgatcagtttttcaatcattaaaagttctctctagtccccggtttaaattgtgatatga 235  Q
    ||||||||| ||||| ||| | |||||||||||||| ||||||||| |||||||||||||    
T  8547 gtgatcagtgtttcattcaatcaaagttctctctagcccccggttttaattgtgatatga 8488  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 40335 - 40282
Alignment:
Q  6 gtttggtgttgcttttggaactagaaacactttaagtttggggttggggtactag 60  Q
    |||||| |||||| |||||||||| |||| ||||||||||||| |||||||||||    
T  40335 gtttggggttgctgttggaactagcaacattttaagtttgggg-tggggtactag 40282  T

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