View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_365 (Length: 234)

Name: NF6867A_low_365
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_365
NF6867A_low_365
[»] chr1 (4 HSPs)
chr1 (20-215)||(7386418-7386613)
chr1 (43-179)||(19991215-19991350)
chr1 (42-126)||(19322649-19322733)
chr1 (185-215)||(19322751-19322781)
[»] chr5 (3 HSPs)
chr5 (19-215)||(4925203-4925404)
chr5 (19-179)||(35205787-35205947)
chr5 (19-160)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (21-179)||(52314493-52314651)
chr3 (23-179)||(53464903-53465059)
chr3 (47-144)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (20-176)||(23563558-23563714)
chr4 (20-148)||(48265287-48265415)
[»] chr2 (2 HSPs)
chr2 (18-114)||(39375508-39375604)
chr2 (173-211)||(39375627-39375665)
[»] chr8 (1 HSPs)
chr8 (18-135)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (21-142)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 7386613 - 7386418
Alignment:
Q  20 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 119  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  7386613 ctaagagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagtt 7386514  T
Q  120 aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtat 215  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7386513 aaattatacatggtagcaatgcattactacgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtat 7386418  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 19991215 - 19991350
Alignment:
Q  43 ccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgca 142  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||  |||| |    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga 19991314  T
Q  143 ttactacgttccttttccagtaattgttagattttgt 179  Q
    ||||||| |||||||||| | ||||||| ||||||||    
T  19991315 ttactaccttccttttcctgcaattgtt-gattttgt 19991350  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
Q  42 tccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactat 126  Q
    |||||||||||||||| ||| ||||||| | ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 19322751 - 19322781
Alignment:
Q  185 tttgagttttatttcttttaattaatagtat 215  Q
    |||||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtat 19322781  T

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Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 4925404 - 4925203
Alignment:
Q  19 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4925404 actaagagcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagt 4925305  T
Q  119 taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt-----------aatactttgagttttatttcttttaatt 207  Q
    |||||||||||||||| ||||||||||||||||||||      |||||||||||||||| |           |||||||||||| |||||||||||||||    
T  4925304 taaactatacatggtaacaatgcattactacgttcct------gtaattgttagattttatacatattttagaatactttgagtattatttcttttaatt 4925211  T
Q  208 aatagtat 215  Q
    ||||||||    
T  4925210 aatagtat 4925203  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 35205947 - 35205787
Alignment:
Q  19 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 118  Q
    ||||||||||| ||||||| |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35205947 actaagagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35205848  T
Q  119 taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 179  Q
    |||||||| ||||| || ||||||||||| | |||||||||| | ||||||  ||||||||    
T  35205847 taaactatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgt 35205787  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 35211203 - 35211344
Alignment:
Q  19 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 118  Q
    ||||||||||| ||||||  |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35211203 actaagagcatgcacatcacctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35211302  T
Q  119 taaactatacatggtagcaatgcattactacgttccttttcc 160  Q
    |||||||| |||||||| ||||||||||| | ||||||||||    
T  35211303 taaactatccatggtagtaatgcattactgccttccttttcc 35211344  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 52314651 - 52314493
Alignment:
Q  21 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 120  Q
    ||||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||    
T  52314651 taagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagtta 52314552  T
Q  121 aactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 179  Q
    |||||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  52314551 aactatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 52314493  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 53465059 - 53464903
Alignment:
Q  23 agagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaa 122  Q
    ||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||||    
T  53465059 agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaa 53464960  T
Q  123 ctatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 179  Q
    |||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  53464959 ctatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 53464903  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 1995906 - 1995809
Alignment:
Q  47 atgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcatt 144  Q
    ||||||||||  ||||| || ||||| || | ||||||||||| | |||||||||| |||||  ||||||| ||||| |  ||| |||||||||||||    
T  1995906 atgggtggtaatacactgactaatgcacttgagtcataatatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcatt 1995809  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 23563714 - 23563558
Alignment:
Q  20 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 119  Q
    |||||||||| ||||||| |||   |||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||    
T  23563714 ctaagagcatgcacatcggctgcatatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagtt 23563615  T
Q  120 aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattt 176  Q
    ||||||| |||||| | ||||||||||||| |||||||||| | |||||| ||||||    
T  23563614 aaactatccatggtggtaatgcattactaccttccttttcctgcaattgtcagattt 23563558  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 48265415 - 48265287
Alignment:
Q  20 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 119  Q
    |||||| ||| ||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||    
T  48265415 ctaagaacatgcacatcgcctgcacatatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagtt 48265316  T
Q  120 aaactatacatggtagcaatgcattacta 148  Q
    ||||||| |||||||| ||||||||||||    
T  48265315 aaactatccatggtagtaatgcattacta 48265287  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 39375508 - 39375604
Alignment:
Q  18 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgag 114  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  39375508 cactaagagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag 39375604  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 39375627 - 39375665
Alignment:
Q  173 attttgtaatactttgagttttatttcttttaattaata 211  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  39375627 attttgtaatactttaagttttatttcttttaattaata 39375665  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 40278487 - 40278604
Alignment:
Q  18 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtag 117  Q
    |||| ||||||||||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||    
T  40278487 cacttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtag 40278586  T
Q  118 ttaaactatacatggtag 135  Q
    ||||||||| ||||||||    
T  40278587 ttaaactatccatggtag 40278604  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 45888944 - 45888823
Alignment:
Q  21 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 120  Q
    ||||||||||||||||||| ||| | || |||||||  ||| ||||||||||| | |||||||| || | | |||||||||| |||||  ||||||| ||    
T  45888944 taagagcatacacatcgtcggtcaaaataggtggtaatacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagcta 45888845  T
Q  121 aactatacatggtagcaatgca 142  Q
    || ||| ||| || ||||||||    
T  45888844 aattatccatagttgcaatgca 45888823  T

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