View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_366 (Length: 233)
Name: NF6867A_low_366
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_366 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36120654 - 36120429
Alignment:
| Q |
1 |
gagatgtttgatatggatctggaagcagcaattgatattgcttccatgtttcatcaatgtattcaagaataatcagtgactctgcaattgatttctggcc |
100 |
Q |
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| T |
36120654 |
gagatctttgataaggatcaggaggcagcaatggatattgcttccatgtttcatcaatgtattcaagaataatcagcgactctgcaattgacttctggcc |
36120555 |
T |
|
| Q |
101 |
atgaacaagaactggaactttcttatgaaccgggttcaattccaaaagaagactacttttgttgaagatatcttcttctatataatcaaactcaacaccc |
200 |
Q |
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| T |
36120554 |
atgaacaagaactggaactttcttatgaaccgggttcatttccaaaagaagactacttttgttgaagatatcttcttctatataatcaaactcaacaccc |
36120455 |
T |
|
| Q |
201 |
ttgagttttagagcccattcatctct |
226 |
Q |
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||||||||||||||||||||| |||| |
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| T |
36120454 |
ttgagttttagagcccattcaactct |
36120429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 36133954 - 36133786
Alignment:
| Q |
37 |
attgcttccatgtttcatcaatgtattcaagaataatcagtgactctgcaattgatttctggccatgaacaagaactggaactttcttatgaaccgggtt |
136 |
Q |
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| T |
36133954 |
attgcttccatgtttcatcaatgtactcaaggataatgaatgactctgcaattggtttctgagcatgaacaagaaccggaaccttcttgtgaaccgggtt |
36133855 |
T |
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| Q |
137 |
caattccaaaagaagactacttttgttgaagatatcttcttctatataatcaaactcaacacccttgag |
205 |
Q |
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| T |
36133854 |
caattccaaaaggagaggagttttgttgaagatatcttcttctacatactcataatttacacccttgag |
36133786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 2684978 - 2684829
Alignment:
| Q |
30 |
aattgatattgcttccatgtttcatcaatgtattcaagaataatcagtgactctgcaattgatttctggccatgaacaagaactggaactttcttatgaa |
129 |
Q |
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||||||||||||| |||| ||||||||||||||||| ||||| | |||||||| ||||| ||| ||| |||| |||||||||||||| ||||| |||| |
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| T |
2684978 |
aattgatattgctgtcatgcttcatcaatgtattcaaagataatgaatgactctggaattggtttttgggcatggacaagaactggaaccttcttgtgaa |
2684879 |
T |
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| Q |
130 |
ccgggttcaattccaaaagaagactacttttgttgaagatatcttcttcta |
180 |
Q |
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| T |
2684878 |
-cgggttccattccaaatggggagagctttcgttgaagatatcttcttcta |
2684829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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