View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_367 (Length: 233)
Name: NF6867A_low_367
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_367 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 38566857 - 38567069
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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| T |
38566857 |
atcttatctcttcaatcgttgctccatctttaccatatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
38566956 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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| T |
38566957 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataatt |
38567056 |
T |
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| Q |
221 |
gtcgactttccac |
233 |
Q |
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| T |
38567057 |
gtcgactttccac |
38567069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 38525732 - 38525944
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
38525732 |
atcttatttcttcaattgttgctccatctttaccatatgcaatgttatccttaatgctggatgcaaataacactggctcctggctgacaagaccaatttt |
38525831 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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| T |
38525832 |
ccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataact |
38525931 |
T |
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| Q |
221 |
gtcgactttccac |
233 |
Q |
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| T |
38525932 |
gtggactttccac |
38525944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 51199554 - 51199491
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccac |
233 |
Q |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccac |
51199491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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