View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_375 (Length: 231)
Name: NF6867A_low_375
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_375 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 4302284 - 4302062
Alignment:
| Q |
7 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtccatatggtgatatct |
106 |
Q |
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| T |
4302284 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctctta--ggaatgtgtccatatggtgatatct |
4302187 |
T |
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| Q |
107 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagtt |
206 |
Q |
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| T |
4302186 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctggtgtttttcttgtcccacacaacctacctataatagtt |
4302087 |
T |
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| Q |
207 |
gcaaacgaactcacttgccgctggg |
231 |
Q |
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| T |
4302086 |
gcaaacgaactcacttgccgctggg |
4302062 |
T |
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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 49100456 - 49100586
Alignment:
| Q |
91 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
190 |
Q |
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| T |
49100456 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtataggcttgacaacagacgcttggaaaatgcaacctctggtgtttttcttgtcccgtgcag |
49100555 |
T |
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| Q |
191 |
cctacctataatagttgcaaacgaactcact |
221 |
Q |
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| T |
49100556 |
cctacctataaacgttgcaaacaaactcact |
49100586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 49112250 - 49112388
Alignment:
| Q |
91 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
190 |
Q |
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| T |
49112250 |
ccatatggtaatatctgttattggtttgcttcaaacggtttaggcttgacaatagactcttggtaaacacaacctctgatgtttttcttgtcccttctaa |
49112349 |
T |
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| Q |
191 |
cctacctataatagttgcaaacgaactcacttgccgctg |
229 |
Q |
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| T |
49112350 |
tctacctataatagttgcaaatgaactcacttggcgctg |
49112388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 49100251 - 49100306
Alignment:
| Q |
35 |
ttgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtcc |
92 |
Q |
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| T |
49100251 |
ttgaagccttttcagccaagactactgcacctagaatttctc--ctaggaatgtgtcc |
49100306 |
T |
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