View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_385 (Length: 230)
Name: NF6867A_low_385
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_385 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 36673528 - 36673304
Alignment:
| Q |
6 |
attgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgttgataaatct |
105 |
Q |
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| T |
36673528 |
attgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataacgtcattgataaatct |
36673429 |
T |
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| Q |
106 |
ttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaag |
205 |
Q |
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| T |
36673428 |
ttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaag |
36673329 |
T |
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| Q |
206 |
tttacaacaatatgagcaatgtaag |
230 |
Q |
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| T |
36673328 |
tttacaacaatatgagcaatgtaag |
36673304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 36695812 - 36695592
Alignment:
| Q |
6 |
attgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgttgataaatct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
36695812 |
attgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataatgttattgataaatct |
36695713 |
T |
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| Q |
106 |
ttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaag |
205 |
Q |
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| T |
36695712 |
ttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggtcaacaatgcttgaag |
36695613 |
T |
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| Q |
206 |
tttacaacaatatgagcaatg |
226 |
Q |
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| T |
36695612 |
tttacaacaatatgagcaatg |
36695592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 36676283 - 36676068
Alignment:
| Q |
6 |
attgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgttgataaatct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
36676283 |
attgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataatgttattgataaatct |
36676184 |
T |
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| Q |
106 |
ttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaag |
205 |
Q |
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| T |
36676183 |
ttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaag |
36676084 |
T |
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| Q |
206 |
tttacaacaatatgag |
221 |
Q |
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| T |
36676083 |
tttacaacaatatgag |
36676068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 36683954 - 36683740
Alignment:
| Q |
8 |
tgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgttgataaatcttt |
107 |
Q |
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|||| ||||| ||||||||||| ||| || | |||| ||| ||| |||||||| | || |||||||| | ||||||||| | | ||||||||||| | |
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| T |
36683954 |
tgattacaggaaaaacatataacgaactgactcgttcatccaccaccactaatctctatgataacccttcaaatttttataatgccattgataaatctct |
36683855 |
T |
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| Q |
108 |
gaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtt |
207 |
Q |
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| T |
36683854 |
gcctgggcaaggatttgaaaatggagtatgtgctctcctaaagattgcatgtgagtgtgttaaacctat---aaaccaaagaccaacaatgcttgaagtt |
36683758 |
T |
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| Q |
208 |
tacaacaatatgagcaat |
225 |
Q |
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||||||||| |||||||| |
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| T |
36683757 |
tacaacaatttgagcaat |
36683740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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