View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_39 (Length: 411)
Name: NF6867A_low_39
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_39 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 411
Target Start/End: Complemental strand, 39718449 - 39718042
Alignment:
| Q |
4 |
aatatgtacaggtcatgtgtcatatgttatgctccatcctggattaattaaagcatcatttgagatttgtcaaacttgaacattcttccttttatttcta |
103 |
Q |
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| T |
39718449 |
aatatgtacaggtcatttgtcatatgttatgctccatcctggattaattaaaacatcatttgagatttgtcaaacttgaacattcttccttttatttcta |
39718350 |
T |
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| Q |
104 |
actttaagtagggtcaccatggttgatgttcaaagatttgtcaactaagctctttattgttagctaccgagcattcagtatttagcatgattcagtgttt |
203 |
Q |
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| T |
39718349 |
actttaagtagggtcaccatggttgatgttcaaagatttgtcaactaagctctttattgttagctaccgagcattcagtatttagcatgattcagtgttt |
39718250 |
T |
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| Q |
204 |
atcttttttgaggcctaagtatcttcaaaattggaatgttagtgaaatatatctattatagtacgtcgaagtggttcagagacttacaataccctttacn |
303 |
Q |
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| T |
39718249 |
atcttttttgaggcctaagtatcttcaaaattggaatgttagtgaaatatatctattatagtacgtcgaagtggttcagagacttacaataccctttact |
39718150 |
T |
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| Q |
304 |
nnnnnnnnnnnnnnnnctgctaatacctaatagttctttttggtttcttccagaagcttggaagcttcatggagatgctatttggcgggcgctatgtgat |
403 |
Q |
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| T |
39718149 |
tttctttttcttttttctgctaatatctaatagttctttttggtttcttccagaagcttggaagcttcatggagatgctatttggcgggcgctatgtgat |
39718050 |
T |
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| Q |
404 |
tcttttga |
411 |
Q |
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| T |
39718049 |
tcttttga |
39718042 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 22549920 - 22549968
Alignment:
| Q |
363 |
ggaagcttcatggagatgctatttggcgggcgctatgtgattcttttga |
411 |
Q |
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| T |
22549920 |
ggaagctttatggagatgttatttggtgggcgctatgtgcttcttttga |
22549968 |
T |
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