View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_391 (Length: 230)
Name: NF6867A_low_391
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_391 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1504745 - 1504521
Alignment:
| Q |
1 |
ttctagtcatgattacaaatatgttgatttttgttaatattatttcaatatcaaatgttagcaattaattgttagatgaatatttactcggttattcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1504745 |
ttctagtcatgattacaaatatgttgatttttgttaatattatttcaatgtcaaatgttagcaattaattattagatgaatatttactcggttattcaga |
1504646 |
T |
|
| Q |
101 |
ttttaacctataattttctactctccttaacccttaactcaatggattaatgatttgcattggttgttcttgatgtgagaacttttatatataaatctgg |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1504645 |
ttttaacctataatcttctactctccttaacccttaactcaatggattaatgatttgcattggttgttcttgatgtgagaacttttatatataaatctgg |
1504546 |
T |
|
| Q |
201 |
cctaaaactaatataagatgtatct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1504545 |
cctaaaactaatataagatgtatct |
1504521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2477314 - 2477278
Alignment:
| Q |
52 |
caaatgttagcaattaattgttagatgaatatttact |
88 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
2477314 |
caaatgttagtaattaattgttagattaatatttact |
2477278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 7879053 - 7879090
Alignment:
| Q |
52 |
caaatgttagcaattaattgttagatgaatatttactc |
89 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
7879053 |
caaatgttagcaattagttgttagattaatatttactc |
7879090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 27112408 - 27112444
Alignment:
| Q |
52 |
caaatgttagcaattaattgttagatgaatatttact |
88 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
27112408 |
caaatgttagtaattaattgttagattaatatttact |
27112444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University