View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_394 (Length: 230)
Name: NF6867A_low_394
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_394 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31241090 - 31240864
Alignment:
| Q |
1 |
actccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacacatgcatgttcctttctattttattagttgtaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31241090 |
actccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacacatgcatgttcctt-ctattttattagttgtaatga |
31240992 |
T |
|
| Q |
101 |
atattttgcagtcaattttattttattgcttatttggtttgagacttgggtggagctgtacattacacttcacatgtatttctttatggattcaatagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
31240991 |
atattttgcagtcaattttattttattgcttatttggtttgagacttgggtggagctgtatattacacttcacatgtatatctttatggattcaatagtt |
31240892 |
T |
|
| Q |
201 |
atgtcgaggtattcatgcagattctcct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
31240891 |
atgtcgaggtattcatgcagattctcct |
31240864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7206053 - 7205839
Alignment:
| Q |
1 |
actccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacacatgcatgtt-cctttctattttattagttgtaatg |
99 |
Q |
| |
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|||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| |||| || |||||||||||||||||||||| |
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| T |
7206053 |
actctaatcagtagcagataatgtgcaaaattcatttcatgatgctctctccggtcaagttacacatgcttgtttcccttctattttattagttgtaatg |
7205954 |
T |
|
| Q |
100 |
aatattttgcagtcaattttattttattgcttatttggtttgagacttgggtggagctgtacattacacttcacatgtatttctttatggattcaatagt |
199 |
Q |
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||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
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| T |
7205953 |
aatattttgttatcaattttattt------------gttttgagacttgggtggagctgtatattacacttcacatgtatttgtttatggattctatagt |
7205866 |
T |
|
| Q |
200 |
tatgtcgaggtattcatgcagattctc |
226 |
Q |
| |
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|||||||||||||||| | |||||||| |
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| T |
7205865 |
tatgtcgaggtattcaagtagattctc |
7205839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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