View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_4 (Length: 645)
Name: NF6867A_low_4
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 36120790 - 36121412
Alignment:
| Q |
1 |
ttgcactgggttcatggattgcattgattaagaaaggtaatgaatgggaaaaagctctaaaggaggcaagagaaatcatggagaagttagaagaggagat |
100 |
Q |
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| T |
36120790 |
ttgcactgggttcatggattgcattgattaagaaaggtaatgaatgggaaaaagctctaaaggaggcaagagaaatcatggagaagttagaagaggatat |
36120889 |
T |
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| Q |
101 |
aaaggggaagaaattctttggtggggacactattgggtaccttgatcttgctcttggatggatcacttgttttcttccaatttgggaagaaattgggtca |
200 |
Q |
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| T |
36120890 |
aaaggggaagaaattctttggtggggacactattgggtaccttgatcttactcttggatggatcacttgttttcttccaatttgggaagaaattgggtca |
36120989 |
T |
|
| Q |
201 |
acgcagatacttgacccattaaaatgtccttccatctcttcatggcagatcaactttctgagccatcctatcatcaaggagtgtttgccaccaagggatg |
300 |
Q |
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| T |
36120990 |
acgcagatacttgacccattaaaatgtccttccatctcttcatggaagatcaactttctgagccatcctatcatcaaggagtgtttgccaccaagggatg |
36121089 |
T |
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| Q |
301 |
aaatgattctttattgccaacgtcgcataaaggagtattcttcaactcatcgtggttaattggttattgatatttatgcatgcatgcatgttcgagtttc |
400 |
Q |
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| T |
36121090 |
aaatgattctttattgccaccgtcgcataaaggagtattcttcaactcatcgtggttaattggttattgatatttatgcatgcatgcatgttcgagtttc |
36121189 |
T |
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| Q |
401 |
atttgattttttgagtaacttatgtatcatatatatagtactttgtgttgtgaattatgtaacgctaaataaattagtttggaagccttgtaaatgaatg |
500 |
Q |
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| T |
36121190 |
atttgattttctgagtaacttatgtatc--atatatagtactttgtgttgtgaattatgtaacgctaaataaattagtttggaagccttgtaaatgaatg |
36121287 |
T |
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| Q |
501 |
gaaattatgaaagatgtggcgacacttatggtgtgctaccttgcttgctagagtctttgggatatatagactcggttcttgtcaatgctcttcattggct |
600 |
Q |
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| T |
36121288 |
gaaattatgaaagatgtggcgacacttatggtgtgctaccttgcttgctagagtctttgggatatatagactcggttcttgtcaatgctcttcattggct |
36121387 |
T |
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| Q |
601 |
atcctctcttaattttggtacattc |
625 |
Q |
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| T |
36121388 |
atcctctcttaattttggtacattc |
36121412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 36134517 - 36134599
Alignment:
| Q |
81 |
gagaagttagaagaggagataaaggggaagaaattctttggtggggacactattgggtaccttgatcttgctcttggatggat |
163 |
Q |
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| T |
36134517 |
gagaagatagaagaggagataaaggggaagaaattctttggaggggacaatattgggtaccttgatcttgctcttggatggat |
36134599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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