View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_409 (Length: 229)

Name: NF6867A_low_409
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_409
NF6867A_low_409
[»] chr6 (2 HSPs)
chr6 (1-223)||(30573653-30573875)
chr6 (1-123)||(30570277-30570399)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30573875 - 30573653
Alignment:
Q  1 atgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatcagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30573875 atgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatcagt 30573776  T
Q  101 gtatttatatttggtttgtgagagagattaaaagaaatatcactactagtcatggttacattcatattataaaaagtttacccttaatattatcctcaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30573775 gtatttatatttggtttgtgagagagattaaaagaaatatcattactagtcatggttacattcatattataaaaagtttacccataatattatcctcaac 30573676  T
Q  201 ggatctcacaatgatatctgaaa 223  Q
    |||||||||||||||||||||||    
T  30573675 ggatctcacaatgatatctgaaa 30573653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 30570399 - 30570277
Alignment:
Q  1 atgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatcagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30570399 atgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttattagt 30570300  T
Q  101 gtatttatatttggtttgtgaga 123  Q
    |||||||||||||| ||||||||    
T  30570299 gtatttatatttggcttgtgaga 30570277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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