View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_41 (Length: 408)
Name: NF6867A_low_41
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 7734004 - 7733616
Alignment:
| Q |
7 |
gaaaatttatacgcattgacgcaataaaaagagcggaaagatagatactcaggtgtccgtctttccgcttgtattgtttnnnnnnn-ttataatatttta |
105 |
Q |
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| T |
7734004 |
gaaaatttatacgcattgacgcaataaaaagagcagaaagatggatattcaggtgtccgtctttccgcttgtattgtttaaaaaaaattataatatgtta |
7733905 |
T |
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| Q |
106 |
taaacacaaagttaataaccaaaaactaaattatatcctctccaaaataaaactaagatggatactcaagtcaatatgaaaacaaagagtgtgaggtatt |
205 |
Q |
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| T |
7733904 |
taaacacaaagttaataaccaaaaactaaattacatccgctccaaaataaaactaagatggatactcaagtcaatatgaaaacaaagagtgtgaggcatt |
7733805 |
T |
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| Q |
206 |
gaaataatagaaatggtgtacattgcttttgtaatgaatgatgcctttctaggcgttggtaagaattcgtctggaagttagtgaaggtctgtttcgatcg |
305 |
Q |
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| T |
7733804 |
gaaataatagaaatggtgtacattgcttttgtaatgaatgaggcctttctaggcattggtaagaagtcgtctggaagttagtgaaggtctgtttcgatcg |
7733705 |
T |
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| Q |
306 |
atgattcttcaatattgggctcaagtgatcgatgaagaatgaaatctatggtttagtcattgaggtgttgtacatgatgtttcatatca |
394 |
Q |
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| T |
7733704 |
atgattcttcaatattgggctcaagtgatcgatgaagaatgaaatctatggtttagtcattgaagcgttgtacatgatgtttcatatca |
7733616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 48458236 - 48458269
Alignment:
| Q |
10 |
aatttatacgcattgacgcaataaaaagagcgga |
43 |
Q |
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| T |
48458236 |
aatttatacgcattaacgcaataaaaagagcgga |
48458269 |
T |
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