View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_412 (Length: 229)
Name: NF6867A_low_412
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_412 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 47628255 - 47628052
Alignment:
| Q |
16 |
ggacatccactggaggaggagagggaatagttggtggaatgacctgaatatgattcatgtccagctgaatggcctgaatttcttctcgtcctgccgtgca |
115 |
Q |
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| T |
47628255 |
ggacatacactggaggaggagagggaatagttggtggaatgacctgaatatgattcatgtccagctgaatggcctgaatttcttctcgtcctgccgtgca |
47628156 |
T |
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| Q |
116 |
tgaaaaatgctggttccatgggaaatggcatttcaattgagacattattaagatatgaaacaacagttcccattgtaggcctatcatctggatattattg |
215 |
Q |
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| T |
47628155 |
tgaaaaatgctggttccatgggaaatggcatttcaattgagacattattaagatatgaaacaacagttcccattgtaggcctatcatctggattttcttg |
47628056 |
T |
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| Q |
216 |
gaca |
219 |
Q |
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|||| |
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| T |
47628055 |
gaca |
47628052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 47619958 - 47619875
Alignment:
| Q |
136 |
ggaaatggcatttcaattgagacattattaagatatgaaacaacagttcccattgtaggcctatcatctggatattattggaca |
219 |
Q |
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| T |
47619958 |
ggaaatggcagttcaagtgagtgattagtaagatatgaaacgactgttgccattgtaggtctagcatttggattttcttggaca |
47619875 |
T |
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