View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_414 (Length: 229)
Name: NF6867A_low_414
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_414 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10922339 - 10922112
Alignment:
| Q |
1 |
tattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaatcgactata |
100 |
Q |
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| T |
10922339 |
tattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactata |
10922240 |
T |
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| Q |
101 |
gttgttaaaccaattgaatctgtggttagacttgattttcacaa-----caataaatacgatatgtatctacaaattttgcctccaataggcggtgaggt |
195 |
Q |
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| T |
10922239 |
gttgttaaaccaattgaatctgtggttcgacttgattttcacaacactgcaataaatacgatatgtatctacaaattttgcctccaataggcggtgaggt |
10922140 |
T |
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| Q |
196 |
tgaattttgataacatgaaataagcact |
223 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
10922139 |
tgaagtttgataacatgaaataagcact |
10922112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 10951130 - 10951102
Alignment:
| Q |
145 |
caataaatacgatatgtatctacaaattt |
173 |
Q |
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| T |
10951130 |
caataaatacgatatgtatctacaaattt |
10951102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45407205 - 45407119
Alignment:
| Q |
1 |
tattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaa |
90 |
Q |
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| T |
45407205 |
tattgctgcaactgattttgta--tataatcgtaccttgtgaatgataggtgct-atactggtacattatacatgtagtatacatagaaa |
45407119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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