View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_416 (Length: 229)
Name: NF6867A_low_416
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_416 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 9396305 - 9396471
Alignment:
| Q |
63 |
ccagatatgtatttccactttattcatcctataatacatttccaaaattttccca-aacatttatctttagtttttcgaaaggtatgccaaaaaa-ctcc |
160 |
Q |
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| T |
9396305 |
ccaggtatgtatttccactttattcatcctataatacatttccaaaattttcccagaacattcatctttagtttttcgaaaggtatgccaaaaaaacttc |
9396404 |
T |
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| Q |
161 |
acacatcctttccgaaaaatatataataatcttcctgcttgtgaaatcatcaagtcatgtgtgctaaag |
229 |
Q |
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| T |
9396405 |
acacatccttttcgaaaaatatataataatcttcctgcttgtgaaatcatcaagtc--gtgtgctaaag |
9396471 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 9391113 - 9391172
Alignment:
| Q |
6 |
atttttcaccctcaattttaacattttccattcaagttcaccccacgtgatatttttcca |
65 |
Q |
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| T |
9391113 |
atttttcaccctcaattttaacattttccattcaagttcaccccacgtgatatttttcca |
9391172 |
T |
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